RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 SH3BP4Q9P0V3 963 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 ZNF337Q9Y3M9 751 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 TESMINQ9Y4I5 508 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 AKAP6Q13023 2319 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 MTORP42345 2549 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 NKX2-2O95096 273 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 NGFRP08138 427 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 ZNF17P17021 662 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 LCN1P31025 176 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 RPL3P39023 403 aaKnown RBP13.3□□□□□ -0.28
CBX3-203ENST00000409747 PDE7AQ13946 482 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 DEFB113Q30KQ7 82 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 ANKRD26P1Q6NSI1 321 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 Q6ZSR9 355 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 SZRD1Q7Z422 152 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 LRRN4CLQ8ND94 238 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 NUP43Q8NFH3 380 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 OR2T11Q8NH01 316 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 PIK3R3Q92569 461 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 STARD4Q96DR4 205 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 TSSK3Q96PN8 268 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 SLC39A3Q9BRY0 314 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 PLEKHF2Q9H8W4 249 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 NTMQ9P121 344 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 PTGDR2Q9Y5Y4 395 aa13.3□□□□□ -0.28
CBX3-203ENST00000409747 PRRC2AP48634 2157 aaKnown RBP13.29□□□□□ -0.28
CBX3-203ENST00000409747 ZNF469Q96JG9 3925 aaPredicted RBP13.29□□□□□ -0.28
CBX3-203ENST00000409747 A0A087WZY1 265 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 TMEM114B3SHH9 223 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 ALG1L2C9J202 215 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 LSM1O15116 133 aaKnown RBP13.29□□□□□ -0.28
CBX3-203ENST00000409747 EMC8O43402 210 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 AKAP10O43572 662 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 HSPA4LO95757 839 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 LINC00032P0C843 101 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 MAPK1P28482 360 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 HPCAL1P37235 193 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 FRKP42685 505 aaPredicted RBP13.29□□□□□ -0.28
CBX3-203ENST00000409747 PRKAG1P54619 331 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 GRAMD1BQ3KR37 738 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 ZCCHC12Q6PEW1 402 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 LRIG3Q6UXM1 1119 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 DDIASQ8IXT1 998 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 METTL25Q8N6Q8 603 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 OR6Y1Q8NGX8 325 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 FIG4Q92562 907 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 SLC9A6Q92581 669 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 PGM2Q96G03 612 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 ZNF845Q96IR2 970 aaPredicted RBP13.29□□□□□ -0.28
CBX3-203ENST00000409747 FAM111AQ96PZ2 611 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 RTN4RQ9BZR6 473 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 RNF122Q9H9V4 155 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 ELOVL5Q9NYP7 299 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 ZNF226Q9NYT6 803 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 DNAJC15Q9Y5T4 150 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 MPDZO75970 2070 aa13.29□□□□□ -0.28
CBX3-203ENST00000409747 VPS13CQ709C8 3753 aa13.28□□□□□ -0.28
CBX3-203ENST00000409747 GXYLT2A0PJZ3 443 aa13.28□□□□□ -0.28
CBX3-203ENST00000409747 NDUFB5O43674 189 aa13.28□□□□□ -0.28
CBX3-203ENST00000409747 NPHS1O60500 1241 aa13.28□□□□□ -0.28
CBX3-203ENST00000409747 FGF4P08620 206 aa13.28□□□□□ -0.28
CBX3-203ENST00000409747 HPGDP15428 266 aa13.28□□□□□ -0.28
CBX3-203ENST00000409747 CD79BP40259 229 aa13.28□□□□□ -0.28
CBX3-203ENST00000409747 MAP3K8P41279 467 aa13.28□□□□□ -0.28
CBX3-203ENST00000409747 SERPINB4P48594 390 aa13.28□□□□□ -0.28
CBX3-203ENST00000409747 SUCLG1P53597 346 aaKnown RBP13.28□□□□□ -0.28
CBX3-203ENST00000409747 PON3Q15166 354 aa13.28□□□□□ -0.28
CBX3-203ENST00000409747 POU4F3Q15319 338 aa13.28□□□□□ -0.28
CBX3-203ENST00000409747 SGCBQ16585 318 aa13.28□□□□□ -0.28
CBX3-203ENST00000409747 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.28□□□□□ -0.28
CBX3-203ENST00000409747 GALNTL6Q49A17 601 aa13.28□□□□□ -0.28
CBX3-203ENST00000409747 RFTN2Q52LD8 501 aaPredicted RBP13.28□□□□□ -0.28
CBX3-203ENST00000409747 ZNF385BQ569K4 471 aa13.28□□□□□ -0.28
CBX3-203ENST00000409747 VWA1Q6PCB0 445 aa13.28□□□□□ -0.28
CBX3-203ENST00000409747 MISPQ8IVT2 679 aa13.28□□□□□ -0.28
CBX3-203ENST00000409747 OR5M1Q8NGP8 315 aa13.28□□□□□ -0.28
CBX3-203ENST00000409747 TWIST2Q8WVJ9 160 aa13.28□□□□□ -0.28
CBX3-203ENST00000409747 PPP3R2Q96LZ3 170 aa13.28□□□□□ -0.28
CBX3-203ENST00000409747 TUBB1Q9H4B7 451 aa13.28□□□□□ -0.28
CBX3-203ENST00000409747 PAQR5Q9NXK6 330 aaPredicted RBP13.28□□□□□ -0.28
CBX3-203ENST00000409747 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.27□□□□□ -0.28
CBX3-203ENST00000409747 UQCRHLA0A096LP55 91 aa13.27□□□□□ -0.28
CBX3-203ENST00000409747 TLDC2A0PJX2 215 aa13.27□□□□□ -0.28
CBX3-203ENST00000409747 IGKV1D-16P01601 117 aa13.27□□□□□ -0.28
CBX3-203ENST00000409747 ALOX5P09917 674 aa13.27□□□□□ -0.28
CBX3-203ENST00000409747 CD8BP10966 210 aa13.27□□□□□ -0.28
CBX3-203ENST00000409747 TBXA2RP21731 343 aa13.27□□□□□ -0.28
CBX3-203ENST00000409747 KIR2DL2P43627 348 aaPredicted RBP13.27□□□□□ -0.28
CBX3-203ENST00000409747 PRIM2P49643 509 aa13.27□□□□□ -0.28
CBX3-203ENST00000409747 CLDN15P56746 228 aa13.27□□□□□ -0.28
CBX3-203ENST00000409747 CLDN20P56880 219 aa13.27□□□□□ -0.28
CBX3-203ENST00000409747 SIRPAP78324 504 aa13.27□□□□□ -0.28
CBX3-203ENST00000409747 MLC1Q15049 377 aa13.27□□□□□ -0.28
CBX3-203ENST00000409747 TMEM44Q2T9K0 475 aa13.27□□□□□ -0.28
CBX3-203ENST00000409747 MFSD12Q6NUT3 480 aa13.27□□□□□ -0.28
CBX3-203ENST00000409747 COX18Q8N8Q8 333 aa13.27□□□□□ -0.28
CBX3-203ENST00000409747 CLHC1Q8NHS4 586 aa13.27□□□□□ -0.28
CBX3-203ENST00000409747 FNDC9Q8TBE3 224 aa13.27□□□□□ -0.28
CBX3-203ENST00000409747 ZBTB8AQ96BR9 441 aa13.27□□□□□ -0.28
CBX3-203ENST00000409747 GIMAP5Q96F15 307 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms