RNA–Protein interactions for RNA: ENST00000374943.8

HLA-DQB1-201, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-201ENST00000374943 CNOT2Q9NZN8 540 aaKnown RBP16.71■□□□□ 0.27
HLA-DQB1-201ENST00000374943 GMEB2Q9UKD1 530 aa16.71■□□□□ 0.27
HLA-DQB1-201ENST00000374943 PILRBQ9UKJ0 227 aa16.71■□□□□ 0.27
HLA-DQB1-201ENST00000374943 SLC6A14Q9UN76 642 aa16.71■□□□□ 0.27
HLA-DQB1-201ENST00000374943 A0A1B0GTQ1 180 aa16.7■□□□□ 0.26
HLA-DQB1-201ENST00000374943 PEX12O00623 359 aa16.7■□□□□ 0.26
HLA-DQB1-201ENST00000374943 THY1P04216 161 aa16.7■□□□□ 0.26
HLA-DQB1-201ENST00000374943 MAOAP21397 527 aa16.7■□□□□ 0.26
HLA-DQB1-201ENST00000374943 SSTR4P31391 388 aa16.7■□□□□ 0.26
HLA-DQB1-201ENST00000374943 MAP2K4P45985 399 aa16.7■□□□□ 0.26
HLA-DQB1-201ENST00000374943 TSPAN31Q12999 210 aa16.7■□□□□ 0.26
HLA-DQB1-201ENST00000374943 SRSF5Q13243 272 aaKnown RBP16.7■□□□□ 0.26
HLA-DQB1-201ENST00000374943 ERV3-1Q14264 604 aa16.7■□□□□ 0.26
HLA-DQB1-201ENST00000374943 YOD1Q5VVQ6 348 aaPredicted RBP16.7■□□□□ 0.26
HLA-DQB1-201ENST00000374943 ZNF730Q6ZMV8 503 aa16.7■□□□□ 0.26
HLA-DQB1-201ENST00000374943 ANKRD13BQ86YJ7 626 aa16.7■□□□□ 0.26
HLA-DQB1-201ENST00000374943 PIGXQ8TBF5 258 aa16.7■□□□□ 0.26
HLA-DQB1-201ENST00000374943 GAB3Q8WWW8 586 aa16.7■□□□□ 0.26
HLA-DQB1-201ENST00000374943 FUNDC2Q9BWH2 189 aa16.7■□□□□ 0.26
HLA-DQB1-201ENST00000374943 ZNF768Q9H5H4 540 aaKnown RBP16.7■□□□□ 0.26
HLA-DQB1-201ENST00000374943 SLC25A19Q9HC21 320 aa16.7■□□□□ 0.26
HLA-DQB1-201ENST00000374943 TESQ9UGI8 421 aaKnown RBP16.7■□□□□ 0.26
HLA-DQB1-201ENST00000374943 ENPP5Q9UJA9 477 aa16.7■□□□□ 0.26
HLA-DQB1-201ENST00000374943 ADAMTS9Q9P2N4 1935 aa16.7■□□□□ 0.26
HLA-DQB1-201ENST00000374943 EFCAB10A6NFE3 127 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 M0R129 80 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 TOX3O15405 576 aaPredicted RBP16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 FADS2O95864 444 aaKnown RBP16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 IGFBP1P08833 259 aaPredicted RBP16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 PIPP12273 146 aaPredicted RBP16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 HOXD11P31277 338 aaPredicted RBP16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 OMPP47874 163 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 LSM11P83369 360 aaKnown RBP eCLIP16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 HOXC5Q00444 222 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 SQSTM1Q13501 440 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 ZNF267Q14586 743 aaPredicted RBP16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 CASP12Q6UXS9 341 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 RASSF6Q6ZTQ3 369 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 Q8N9G6 341 aaPredicted RBP16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 C7orf57Q8NEG2 295 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 OR8J1Q8NGP2 316 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 OR1L3Q8NH93 324 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 CCDC74AQ96AQ1 378 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 Q96MT0 163 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 NECTIN3Q9NQS3 549 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 WARS2Q9UGM6 360 aaKnown RBP16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 NTNG1Q9Y2I2 539 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 SEC16AO15027 2179 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 TRAPPC13A5PLN9 417 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 HRKO00198 91 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 HYAL3O43820 417 aaPredicted RBP16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 PDGFBP01127 241 aaPredicted RBP16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 CCNA2P20248 432 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 FPR3P25089 353 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 SLC15A1P46059 708 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 NUDT6P53370 316 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 CDK5Q00535 292 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 DYNC1I2Q13409 638 aaKnown RBP16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 ZSWIM7Q19AV6 140 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 FLYWCH1Q4VC44 716 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 SLC25A30Q5SVS4 291 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 SLC16A12Q6ZSM3 486 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 TTLL10Q6ZVT0 673 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 MBOAT2Q6ZWT7 520 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 PRICKLE2Q7Z3G6 844 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 ZAR1Q86SH2 424 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 GRAMD2AQ8IUY3 354 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 NKAIN4Q8IVV8 208 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 ZNF615Q8N8J6 731 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 OR7G1Q8NGA0 311 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 SLC35B4Q969S0 331 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 YIPF6Q96EC8 236 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 POLDIP3Q9BY77 421 aaKnown RBP16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 TIMMDC1Q9NPL8 285 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 C14orf105Q9NVL8 296 aa16.69■□□□□ 0.26
HLA-DQB1-201ENST00000374943 NPIPA5A0A0B4J1W7 369 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 NPIPA7E9PJI5 369 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 KLF4O43474 513 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 CLPSP04118 112 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 NPIPA8P0DM63 369 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 TNNI3P19429 210 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 DRD5P21918 477 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 PLAURQ03405 335 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 DSG2Q14126 1118 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 IRF3Q14653 427 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 OCLNQ16625 522 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 PLK5Q496M5 336 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 PEAR1Q5VY43 1037 aaPredicted RBP16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 NPSR1Q6W5P4 371 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 CCDC81Q6ZN84 652 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 QSOX2Q6ZRP7 698 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 RRM2BQ7LG56 351 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 MRGPREQ86SM8 312 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 KIF18BQ86Y91 864 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 GPR135Q8IZ08 494 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 OR4C6Q8NH72 309 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 C9orf43Q8TAL5 461 aaPredicted RBP16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 CNPPD1Q9BV87 410 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 OR10A5Q9H207 317 aa16.68■□□□□ 0.26
HLA-DQB1-201ENST00000374943 Q9N2J8 555 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms