RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 RELTQ969Z4 430 aa11.09□□□□□ -0.63
COL9A1-202ENST00000357250 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.09□□□□□ -0.63
COL9A1-202ENST00000357250 ZNF701Q9NV72 531 aaPredicted RBP11.09□□□□□ -0.63
COL9A1-202ENST00000357250 NUBP2Q9Y5Y2 271 aa11.09□□□□□ -0.63
COL9A1-202ENST00000357250 PTPRZ1P23471 2315 aaPredicted RBP11.08□□□□□ -0.63
COL9A1-202ENST00000357250 HTR3AP46098 478 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 CPOQ8IVL8 374 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 LAS2Q8IYD9 372 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 ACOT4Q8N9L9 421 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 ADAMTS14Q8WXS8 1223 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 LRRC46Q96FV0 321 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 CASD1Q96PB1 797 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 BEX2Q9BXY8 128 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 NT5DC2Q9H857 520 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 BEX1Q9HBH7 125 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 ERVK13-1Q9NX77 482 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 COL22A1Q8NFW1 1626 aaPredicted RBP11.08□□□□□ -0.64
COL9A1-202ENST00000357250 CLDN24A6NM45 220 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 EGFP01133 1207 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 ZNF35P13682 527 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 NKAPLQ5M9Q1 402 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 PXKQ7Z7A4 578 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 PDZD9Q8IXQ8 264 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 LRRC56Q8IYG6 542 aaPredicted RBP11.08□□□□□ -0.64
COL9A1-202ENST00000357250 MFSD8Q8NHS3 518 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 WDR20Q8TBZ3 569 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 TCEAL3Q969E4 200 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 PEX11GQ96HA9 241 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 OR1F2PQ96R84 312 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 PITX2Q99697 317 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 TTTY10Q9BZA0 68 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 CWH43Q9H720 699 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 MED17Q9NVC6 651 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 ECM29Q5VYK3 1845 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 H0YIV9 168 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 LATO43561 262 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 CSF1P09603 554 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 RPS15P62841 145 aaKnown RBP11.08□□□□□ -0.64
COL9A1-202ENST00000357250 C1orf61Q13536 156 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 MELKQ14680 651 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 ZNF791Q3KP31 576 aaPredicted RBP11.08□□□□□ -0.64
COL9A1-202ENST00000357250 ZNF691Q5VV52 312 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 FRMPD2BQ6IN97 320 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 HAGHLQ6PII5 290 aaPredicted RBP11.08□□□□□ -0.64
COL9A1-202ENST00000357250 TMEM151BQ8IW70 566 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 UEVLDQ8IX04 471 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 SLC35F2Q8IXU6 374 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 TSACCQ96A04 125 aaPredicted RBP11.08□□□□□ -0.64
COL9A1-202ENST00000357250 LINC00597Q9H2U6 94 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 PAQR5Q9NXK6 330 aaPredicted RBP11.08□□□□□ -0.64
COL9A1-202ENST00000357250 ACTR10Q9NZ32 417 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 MAST2Q6P0Q8 1798 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 GABRR3A8MPY1 467 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 ACOT7O00154 380 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 SMAD6O43541 496 aaKnown RBP11.08□□□□□ -0.64
COL9A1-202ENST00000357250 P04436 131 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 LCKP06239 509 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 CCNOP22674 350 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 CHMP24386 653 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 CCR7P32248 378 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 TM4SF4P48230 202 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 TAP2Q03519 686 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 GPR139Q6DWJ6 353 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 C1orf94Q6P1W5 598 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 HSD11B1LQ7Z5J1 315 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 KLHDC9Q8NEP7 349 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 OR9Q2Q8NGE9 314 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 OR8J2Q8NGG1 315 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 TRMT10AQ8TBZ6 339 aaKnown RBP11.08□□□□□ -0.64
COL9A1-202ENST00000357250 MYADMQ96S97 322 aa11.08□□□□□ -0.64
COL9A1-202ENST00000357250 IL1AP01583 271 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 HMGN2P05204 90 aaKnown RBP11.07□□□□□ -0.64
COL9A1-202ENST00000357250 TFPTP0C1Z6 253 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 ARAFP10398 606 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 TIMP2P16035 220 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 CA5AP35218 305 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 DCAF7P61962 342 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 MLLT11Q13015 90 aaPredicted RBP11.07□□□□□ -0.64
COL9A1-202ENST00000357250 PIN1Q13526 163 aaPredicted RBP11.07□□□□□ -0.64
COL9A1-202ENST00000357250 PTPRRQ15256 657 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 KCTD20Q7Z5Y7 419 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 ARL14Q8N4G2 192 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 METTL27Q8N6F8 245 aaPredicted RBP11.07□□□□□ -0.64
COL9A1-202ENST00000357250 ASB15Q8WXK1 588 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 NANOS1Q8WY41 292 aaKnown RBP11.07□□□□□ -0.64
COL9A1-202ENST00000357250 NT5C3BQ969T7 300 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 ISL2Q96A47 359 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 SLC6A7Q99884 636 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 PBDC1Q9BVG4 233 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 CCDC86Q9H6F5 360 aaKnown RBP11.07□□□□□ -0.64
COL9A1-202ENST00000357250 SLC39A1Q9NY26 324 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 NLKQ9UBE8 527 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 ABCA3Q99758 1704 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 PCP4L1A6NKN8 68 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 SC5DO75845 299 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 SFTPBP07988 381 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 GARNL3Q5VVW2 1013 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 RAET1LQ5VY80 246 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 TPRA1Q86W33 373 aa11.07□□□□□ -0.64
COL9A1-202ENST00000357250 OR4N5Q8IXE1 308 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms