RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 CLDN8P56748 225 aa16.65■□□□□ 0.26
CLN3-202ENST00000355477 CLDN18P56856 261 aa16.65■□□□□ 0.26
CLN3-202ENST00000355477 WDR4P57081 412 aaKnown RBP16.65■□□□□ 0.26
CLN3-202ENST00000355477 PRR5P85299 388 aa16.65■□□□□ 0.26
CLN3-202ENST00000355477 STX3Q13277 289 aa16.65■□□□□ 0.26
CLN3-202ENST00000355477 AAGABQ6PD74 315 aa16.65■□□□□ 0.26
CLN3-202ENST00000355477 ZCCHC12Q6PEW1 402 aa16.65■□□□□ 0.26
CLN3-202ENST00000355477 ENPP6Q6UWR7 440 aa16.65■□□□□ 0.26
CLN3-202ENST00000355477 ANKRD42Q8N9B4 389 aa16.65■□□□□ 0.26
CLN3-202ENST00000355477 C9orf106Q8NAJ2 232 aa16.65■□□□□ 0.26
CLN3-202ENST00000355477 OR4C3Q8NH37 302 aa16.65■□□□□ 0.26
CLN3-202ENST00000355477 MBD3L2Q8NHZ7 208 aaPredicted RBP16.65■□□□□ 0.26
CLN3-202ENST00000355477 PSMA8Q8TAA3 256 aa16.65■□□□□ 0.26
CLN3-202ENST00000355477 C14orf79Q96F83 325 aa16.65■□□□□ 0.26
CLN3-202ENST00000355477 PAIP2Q9BPZ3 127 aaKnown RBP16.65■□□□□ 0.26
CLN3-202ENST00000355477 ZCCHC3Q9NUD5 404 aaKnown RBP16.65■□□□□ 0.26
CLN3-202ENST00000355477 PNPOQ9NVS9 261 aa16.65■□□□□ 0.26
CLN3-202ENST00000355477 ASIC5Q9NY37 505 aa16.65■□□□□ 0.26
CLN3-202ENST00000355477 HAO1Q9UJM8 370 aa16.65■□□□□ 0.26
CLN3-202ENST00000355477 H0Y3Z8 333 aa16.64■□□□□ 0.25
CLN3-202ENST00000355477 ANGPTL1O95841 491 aa16.64■□□□□ 0.25
CLN3-202ENST00000355477 ALOX5P09917 674 aa16.64■□□□□ 0.25
CLN3-202ENST00000355477 ZNF708P17019 499 aa16.64■□□□□ 0.25
CLN3-202ENST00000355477 CHMP24386 653 aa16.64■□□□□ 0.25
CLN3-202ENST00000355477 CCT3P49368 545 aaKnown RBP16.64■□□□□ 0.25
CLN3-202ENST00000355477 CLK3P49761 638 aaKnown RBP16.64■□□□□ 0.25
CLN3-202ENST00000355477 AGFG1P52594 562 aaKnown RBP16.64■□□□□ 0.25
CLN3-202ENST00000355477 C21orf58P58505 322 aa16.64■□□□□ 0.25
CLN3-202ENST00000355477 TLE4Q04727 773 aa16.64■□□□□ 0.25
CLN3-202ENST00000355477 BST1Q10588 318 aa16.64■□□□□ 0.25
CLN3-202ENST00000355477 MAD2L1Q13257 205 aaPredicted RBP16.64■□□□□ 0.25
CLN3-202ENST00000355477 SNTB1Q13884 538 aaKnown RBP16.64■□□□□ 0.25
CLN3-202ENST00000355477 RCAN2Q14206 197 aa16.64■□□□□ 0.25
CLN3-202ENST00000355477 LASP1Q14847 261 aaKnown RBP16.64■□□□□ 0.25
CLN3-202ENST00000355477 SMU1Q2TAY7 513 aa16.64■□□□□ 0.25
CLN3-202ENST00000355477 BEND6Q5SZJ8 279 aaPredicted RBP16.64■□□□□ 0.25
CLN3-202ENST00000355477 CCNJQ5T5M9 372 aa16.64■□□□□ 0.25
CLN3-202ENST00000355477 ADGRE4PQ86SQ3 457 aa16.64■□□□□ 0.25
CLN3-202ENST00000355477 OR5M1Q8NGP8 315 aa16.64■□□□□ 0.25
CLN3-202ENST00000355477 JADE3Q92613 823 aa16.64■□□□□ 0.25
CLN3-202ENST00000355477 PRPF18Q99633 342 aaKnown RBP16.64■□□□□ 0.25
CLN3-202ENST00000355477 DUSP26Q9BV47 211 aa16.64■□□□□ 0.25
CLN3-202ENST00000355477 TBL1XR1Q9BZK7 514 aa16.64■□□□□ 0.25
CLN3-202ENST00000355477 BHLHE41Q9C0J9 482 aaPredicted RBP16.64■□□□□ 0.25
CLN3-202ENST00000355477 ATAD3AQ9NVI7 634 aa16.64■□□□□ 0.25
CLN3-202ENST00000355477 NOP53Q9NZM5 478 aaKnown RBP16.64■□□□□ 0.25
CLN3-202ENST00000355477 ZNF629Q9UEG4 869 aaPredicted RBP16.64■□□□□ 0.25
CLN3-202ENST00000355477 AKAP6Q13023 2319 aa16.64■□□□□ 0.25
CLN3-202ENST00000355477 IGLV3-32A0A0A0MS00 114 aa16.63■□□□□ 0.25
CLN3-202ENST00000355477 TMEM120BA0PK00 339 aa16.63■□□□□ 0.25
CLN3-202ENST00000355477 CLCA1A8K7I4 914 aa16.63■□□□□ 0.25
CLN3-202ENST00000355477 DVL2O14641 736 aa16.63■□□□□ 0.25
CLN3-202ENST00000355477 GMFGO60234 142 aa16.63■□□□□ 0.25
CLN3-202ENST00000355477 SNUPNO95149 360 aaKnown RBP16.63■□□□□ 0.25
CLN3-202ENST00000355477 HK1P19367 917 aa16.63■□□□□ 0.25
CLN3-202ENST00000355477 PRIM2P49643 509 aa16.63■□□□□ 0.25
CLN3-202ENST00000355477 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.63■□□□□ 0.25
CLN3-202ENST00000355477 PGS1Q32NB8 556 aa16.63■□□□□ 0.25
CLN3-202ENST00000355477 LSM12Q3MHD2 195 aaKnown RBP16.63■□□□□ 0.25
CLN3-202ENST00000355477 HHATQ5VTY9 493 aa16.63■□□□□ 0.25
CLN3-202ENST00000355477 NATD1Q8N6N6 113 aa16.63■□□□□ 0.25
CLN3-202ENST00000355477 COX18Q8N8Q8 333 aa16.63■□□□□ 0.25
CLN3-202ENST00000355477 CDS1Q92903 461 aa16.63■□□□□ 0.25
CLN3-202ENST00000355477 C1GALT1C1Q96EU7 318 aa16.63■□□□□ 0.25
CLN3-202ENST00000355477 DTNBP1Q96EV8 351 aa16.63■□□□□ 0.25
CLN3-202ENST00000355477 NUF2Q9BZD4 464 aa16.63■□□□□ 0.25
CLN3-202ENST00000355477 GPATCH2Q9NW75 528 aa16.63■□□□□ 0.25
CLN3-202ENST00000355477 ZNF337Q9Y3M9 751 aa16.63■□□□□ 0.25
CLN3-202ENST00000355477 AKAP9Q99996 3911 aa16.63■□□□□ 0.25
CLN3-202ENST00000355477 HEATR5AQ86XA9 2040 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 TEP1Q99973 2627 aaKnown RBP16.62■□□□□ 0.25
CLN3-202ENST00000355477 ALG1L2C9J202 215 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 SYT5O00445 386 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 OXSR1O95747 527 aaPredicted RBP16.62■□□□□ 0.25
CLN3-202ENST00000355477 TBXA2RP21731 343 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 CTSSP25774 331 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 CLDN15P56746 228 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 HBA1P69905 142 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 C17orf67Q0P5P2 114 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 FOXF2Q12947 444 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 TP53BP2Q13625 1128 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 BCL2A1Q16548 175 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 CDC73Q6P1J9 531 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 CAMKMTQ7Z624 323 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 GATSQ8NAP1 163 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 UCN2Q96RP3 112 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 SH3GL2Q99962 352 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 BTBD2Q9BX70 525 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 PIGUQ9H490 435 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 PTGES2Q9H7Z7 377 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 MCCC2Q9HCC0 563 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 L3MBTL1Q9Y468 752 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 KCNE3Q9Y6H6 103 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 CELSR1Q9NYQ6 3014 aa16.62■□□□□ 0.25
CLN3-202ENST00000355477 MAP1AP78559 2803 aaPredicted RBP16.61■□□□□ 0.25
CLN3-202ENST00000355477 OR2M5A3KFT3 312 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 SHISA8B8ZZ34 492 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 H0YC42 278 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 CFLARO15519 480 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 NGFRP08138 427 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms