RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 ALPPP05187 535 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 KCNJ5P48544 419 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 MANFP55145 182 aaKnown RBP8.03□□□□□ -1.12
TRIM55-204ENST00000353317 GALK2Q01415 458 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 SIGLEC14Q08ET2 396 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 SHBQ15464 509 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 YIF1BQ5BJH7 314 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 OR2G6Q5TZ20 316 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 KHDRBS2Q5VWX1 349 aaKnown RBP8.03□□□□□ -1.12
TRIM55-204ENST00000353317 ACSM5Q6NUN0 579 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 IKBIPQ70UQ0 350 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 VN1R4Q7Z5H5 301 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 PAQR7Q86WK9 346 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 FAM26EQ8N5C1 309 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 TMEM105Q8N8V8 129 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 KCT2Q8NC54 265 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 ATP6V1C2Q8NEY4 427 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 UBASH3BQ8TF42 649 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 EDAQ92838 391 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 ZNF354BQ96LW1 612 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 FRMD6Q96NE9 622 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 GPA33Q99795 319 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 KATNB1Q9BVA0 655 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 PCBD2Q9H0N5 130 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 RNF121Q9H920 327 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 ACAD8Q9UKU7 415 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 A4GNTQ9UNA3 340 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 SPIN1Q9Y657 262 aaPredicted RBP8.03□□□□□ -1.12
TRIM55-204ENST00000353317 LOC105369274A0A096LPK9 316 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 LOC102723532A0A0G2JNH3 316 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 PRAMEF27A3QJZ7 478 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 LRIT2A6NDA9 550 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 POLR1CO15160 346 aaPredicted RBP8.03□□□□□ -1.12
TRIM55-204ENST00000353317 P2RX6O15547 441 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 NME6O75414 186 aaPredicted RBP8.03□□□□□ -1.12
TRIM55-204ENST00000353317 PRKRAO75569 313 aaKnown RBP8.03□□□□□ -1.12
TRIM55-204ENST00000353317 RAB36O95755 333 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 SERPIND1P05546 499 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 YES1P07947 543 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 TSPAN19P0C672 248 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 DDCP20711 480 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 MMP11P24347 488 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 NUDT1P36639 197 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 SLC9A3P48764 834 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 GAS1P54826 345 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 CAV3P56539 151 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 HHEXQ03014 270 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 HSPB3Q12988 150 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 DDI2Q5TDH0 399 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 PAMR1Q6UXH9 720 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 MAMSTRQ6ZN01 415 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 C6orf120Q7Z4R8 191 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 ZER1Q7Z7L7 766 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 OR4N4Q8N0Y3 316 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 KRT78Q8N1N4 520 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 SLC25A45Q8N413 288 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 GDPD1Q8N9F7 314 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 FGF11Q92914 225 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 TM9SF2Q99805 663 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 POLDIP3Q9BY77 421 aaKnown RBP8.03□□□□□ -1.12
TRIM55-204ENST00000353317 ACTR10Q9NZ32 417 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 SEC14L3Q9UDX4 400 aa8.03□□□□□ -1.12
TRIM55-204ENST00000353317 SF3B6Q9Y3B4 125 aaKnown RBP8.03□□□□□ -1.12
TRIM55-204ENST00000353317 GSAPA4D1B5 854 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 M0R3H8 397 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 BCAT2O15382 392 aaPredicted RBP8.02□□□□□ -1.12
TRIM55-204ENST00000353317 ALX3O95076 343 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 GIPRP48546 466 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 RPS25P62851 125 aaKnown RBP8.02□□□□□ -1.12
TRIM55-204ENST00000353317 EFNB1P98172 346 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 CHRNEQ04844 493 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 GINS1Q14691 196 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 PYDC2Q56P42 97 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 PODNL1Q6PEZ8 512 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 HSDL2Q6YN16 418 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 GLCCI1Q86VQ1 547 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 IQCHQ86VS3 1027 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 ARL14Q8N4G2 192 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 OR52P1PQ8NH57 321 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 GATAD2BQ8WXI9 593 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 TM4SF18Q96CE8 201 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 C1GALT1C1Q96EU7 318 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 KCTD7Q96MP8 289 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 ZNF582Q96NG8 517 aaPredicted RBP8.02□□□□□ -1.12
TRIM55-204ENST00000353317 TREX2Q9BQ50 279 aaPredicted RBP8.02□□□□□ -1.12
TRIM55-204ENST00000353317 C17orf62Q9BQA9 187 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 RAB11FIP5Q9BXF6 653 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 PCED1AQ9H1Q7 454 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 SERHL2Q9H4I8 314 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 SLA2Q9H6Q3 261 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 NT5DC2Q9H857 520 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 FAM60AQ9NP50 221 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 PRMT8Q9NR22 394 aaPredicted RBP8.02□□□□□ -1.12
TRIM55-204ENST00000353317 SIRT3Q9NTG7 399 aaPredicted RBP8.02□□□□□ -1.12
TRIM55-204ENST00000353317 HRASLS2Q9NWW9 162 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 ZSCAN32Q9NX65 697 aa8.02□□□□□ -1.12
TRIM55-204ENST00000353317 TEX10Q9NXF1 929 aaPredicted RBP8.02□□□□□ -1.12
TRIM55-204ENST00000353317 ASCC3Q8N3C0 2202 aaKnown RBP8.02□□□□□ -1.13
TRIM55-204ENST00000353317 A0A1W2PS29 197 aa8.02□□□□□ -1.13
TRIM55-204ENST00000353317 DDX5P17844 614 aaKnown RBP8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms