RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 PAGE3Q5JUK9 113 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 TMEM53Q6P2H8 277 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 SUN5Q8TC36 379 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 ZBED3Q96IU2 234 aaPredicted RBP16.3■□□□□ 0.2
SHANK1-201ENST00000293441 RDH14Q9HBH5 336 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 MYNNQ9NPC7 610 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 NME4O00746 187 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 IFNA5P01569 189 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 PABPC4LP0CB38 370 aaKnown RBP16.3■□□□□ 0.2
SHANK1-201ENST00000293441 MYOGP15173 224 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 CRABP1P29762 137 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 HOXC13P31276 330 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 EIF2S3LQ2VIR3 472 aaKnown RBP16.3■□□□□ 0.2
SHANK1-201ENST00000293441 FRS2Q8WU20 508 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 IER3IP1Q9Y5U9 82 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 ACTL6BO94805 426 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 TUBG1P23258 451 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 SELENOWP63302 87 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 OR9A4Q8NGU2 314 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 COQ8AQ8NI60 647 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 SYT4Q9H2B2 425 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 BORCS7-ASMTA0A0B4J1R7 106 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 MROH6A6NGR9 719 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 RAB3BP20337 219 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 RGRP47804 291 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 OR1D4P47884 311 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 TMBIM6P55061 237 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 FAM217AQ8IXS0 508 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 NAT6Q93015 286 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 TIMM29Q9BSF4 260 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 BTNL2Q9UIR0 455 aa16.3■□□□□ 0.2
SHANK1-201ENST00000293441 SSX5O60225 188 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 RP2O75695 350 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 CAPN3P20807 821 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 PIP5KL1Q5T9C9 394 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 LCN8Q6JVE9 175 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 BAIAP2L2Q6UXY1 529 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 RNF175Q8N4F7 328 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 LSM14AQ8ND56 463 aaKnown RBP16.29■□□□□ 0.2
SHANK1-201ENST00000293441 SGCZQ96LD1 299 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 MYO10Q9HD67 2058 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 CCL26Q9Y258 94 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 B3GALT1Q9Y5Z6 326 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 SCGB2A1O75556 95 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 H2AFB2P0C5Z0 115 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 PRLHRP49683 370 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 ZP2Q05996 745 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 RAB41Q5JT25 222 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 CTSL3PQ5NE16 218 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 C7orf34Q96L11 122 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 RTP3Q9BQQ7 232 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 CSNK1G1Q9HCP0 422 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 KLHL9Q9P2J3 617 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 IFNA2P01563 188 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 PRDX3P30048 256 aaKnown RBP16.29■□□□□ 0.2
SHANK1-201ENST00000293441 CSNK1EP49674 416 aaKnown RBP16.29■□□□□ 0.2
SHANK1-201ENST00000293441 IST1P53990 364 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 TDGQ13569 410 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 COQ5Q5HYK3 327 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 ANKK1Q8NFD2 765 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 ATOH1Q92858 354 aaPredicted RBP16.29■□□□□ 0.2
SHANK1-201ENST00000293441 ACPTQ9BZG2 426 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 SAGE1Q9NXZ1 904 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 LHX3Q9UBR4 397 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 A0A0A6YYH2 397 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 A6NIZ1 184 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 A6NJ64 397 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 SDC1P18827 310 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 PCGF2P35227 344 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 RAP1BP61224 184 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 RAP1AP62834 184 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 TP53I3Q53FA7 332 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 TMEM239Q8WW34 195 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 HSPB11Q9Y547 144 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 SLC1A7O00341 560 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 CRTAPO75718 401 aaPredicted RBP16.29■□□□□ 0.2
SHANK1-201ENST00000293441 GNAO1P09471 354 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 ABOP16442 354 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 SQSTM1Q13501 440 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 CCDC58Q4VC31 144 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 OR5H2Q8NGV7 314 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 ZNF420Q8TAQ5 688 aaPredicted RBP16.29■□□□□ 0.2
SHANK1-201ENST00000293441 GCDHQ92947 438 aaPredicted RBP16.29■□□□□ 0.2
SHANK1-201ENST00000293441 CUEDC1Q9NWM3 386 aaPredicted RBP16.29■□□□□ 0.2
SHANK1-201ENST00000293441 HEMK1Q9Y5R4 338 aaPredicted RBP16.29■□□□□ 0.2
SHANK1-201ENST00000293441 CSNK1G3Q9Y6M4 447 aa16.29■□□□□ 0.2
SHANK1-201ENST00000293441 MPPED1O15442 326 aa16.28■□□□□ 0.2
SHANK1-201ENST00000293441 AQP9O43315 295 aa16.28■□□□□ 0.2
SHANK1-201ENST00000293441 VASPP50552 380 aaPredicted RBP16.28■□□□□ 0.2
SHANK1-201ENST00000293441 ARHGAP19Q14CB8 494 aa16.28■□□□□ 0.2
SHANK1-201ENST00000293441 PPA1Q15181 289 aa16.28■□□□□ 0.2
SHANK1-201ENST00000293441 ABHD12BQ7Z5M8 362 aaPredicted RBP16.28■□□□□ 0.2
SHANK1-201ENST00000293441 ENDOVQ8N8Q3 282 aaKnown RBP16.28■□□□□ 0.2
SHANK1-201ENST00000293441 FKBP10Q96AY3 582 aa16.28■□□□□ 0.2
SHANK1-201ENST00000293441 USB1Q9BQ65 265 aaKnown RBP16.28■□□□□ 0.2
SHANK1-201ENST00000293441 POTEKPQ9BYX7 375 aa16.28■□□□□ 0.2
SHANK1-201ENST00000293441 OR6C2Q9NZP2 312 aa16.28■□□□□ 0.2
SHANK1-201ENST00000293441 ABRACLQ9P1F3 81 aa16.28■□□□□ 0.2
SHANK1-201ENST00000293441 SPEF1Q9Y4P9 236 aa16.28■□□□□ 0.2
SHANK1-201ENST00000293441 MYH4Q9Y623 1939 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms