RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 RPL11P62913 178 aaKnown RBP13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 SLX4IPQ5VYV7 408 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 TAC4Q86UU9 113 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 KDELR3O43731 214 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 MRPS14O60783 128 aaKnown RBP13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 SOCS5O75159 536 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 HOXB2P14652 356 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 SNCAP37840 140 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 NPRL3Q12980 569 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 B3GNT7Q8NFL0 401 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 DUSP22Q9NRW4 184 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 HRASLS2Q9NWW9 162 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 EXO1Q9UQ84 846 aaKnown RBP13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 TACR3P29371 465 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 MAP2K4P45985 399 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 HIST2H3AQ71DI3 136 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 OR51J1Q9H342 316 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 PRR36Q9H6K5 1346 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 GLOD5A6NK44 160 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 SRPX2O60687 465 aaPredicted RBP13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 SDC3O75056 442 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 TIMP2P16035 220 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 TRHRP34981 398 aaPredicted RBP13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 TAS2R19P59542 299 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 LILRA4P59901 499 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 GTF2H4Q92759 462 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 TMEM59Q9BXS4 323 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 FKRPQ9H9S5 495 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 FAM96BQ9Y3D0 163 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 C2CD4BA6NLJ0 364 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 PSMB3P49720 205 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 EEF1DP3Q658K8 133 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 OTOP2Q7RTS6 562 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 ZNF546Q86UE3 836 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 CNTN4Q8IWV2 1026 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 OR4A16Q8NH70 328 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 PSMF1Q92530 271 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 INTS12Q96CB8 462 aaKnown RBP13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 SORCS2Q96PQ0 1159 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 DHRS9Q9BPW9 319 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 HRASLSQ9HDD0 168 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 GPR39O43194 453 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 DUSP11O75319 330 aaKnown RBP13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 DRD5P21918 477 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 RPS18P62269 152 aaKnown RBP13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 YIF1BQ5BJH7 314 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 GDPGP1Q6ZNW5 385 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 CYB5D2Q8WUJ1 264 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 ESAMQ96AP7 390 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 TTYH3Q9C0H2 523 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 PADI3Q9ULW8 664 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 PROS1P07225 676 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 GGT1P19440 569 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 CSN1S1P47710 185 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 NRLP54845 237 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 SPANXN4Q5MJ08 99 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 PRSS48Q7RTY5 328 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 GPR148Q8TDV2 347 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 SENP5Q96HI0 755 aaPredicted RBP13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 CACNA1CQ13936 2221 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 RPS17P08708 135 aaKnown RBP13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 RAC1P63000 192 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 RBPJQ06330 500 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 FAM69BQ5VUD6 431 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 CNIH3Q8TBE1 160 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 SLC23A2Q9UGH3 650 aa13.23□□□□□ -0.29
CCDC88A-201ENST00000263630 B4GALT5O43286 388 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 PTPRCAPQ14761 206 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 IL17RDQ8NFM7 739 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 RBM24Q9BX46 236 aaKnown RBP13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 MCTS1Q9ULC4 181 aaKnown RBP13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 SLC22A23A1A5C7 686 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 LILRB3O75022 631 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 HLA-DQB2P05538 268 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 HLA-EP13747 358 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 DRD2P14416 443 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 TYRP1P17643 537 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 GRPRP30550 384 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 DAOAP59103 153 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 ZNF718Q3SXZ3 478 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 DUSP28Q4G0W2 176 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 SH3RF2Q8TEC5 729 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 SMAP2Q8WU79 429 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 IL1F10Q8WWZ1 152 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 DNAJC19Q96DA6 116 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 MVB12BQ9H7P6 319 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 CBY3A6NI87 242 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 MITFO75030 526 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 HLA-AP01891 365 aaKnown RBP13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 GBAP04062 536 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 RAB13P51153 203 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 Q1RN00 199 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 CES4AQ5XG92 561 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 SERINC5Q86VE9 423 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 OR5W2Q8NH69 310 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 OR14L1PQ8NHC6 308 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 ITGB2P05107 769 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 TMEM11P17152 192 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 DLX5P56178 289 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 PRAMEF8Q5VWM4 474 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms