RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 SEMA4CQ9C0C4 833 aa16.65■□□□□ 0.26
VRK3-225ENST00000601912 WWTR1Q9GZV5 400 aa16.65■□□□□ 0.26
VRK3-225ENST00000601912 SAMHD1Q9Y3Z3 626 aaKnown RBP16.65■□□□□ 0.26
VRK3-225ENST00000601912 U3KQV3 271 aa16.65■□□□□ 0.26
VRK3-225ENST00000601912 ZFHX2Q9C0A1 2572 aaPredicted RBP16.65■□□□□ 0.26
VRK3-225ENST00000601912 SOCS2O14508 198 aa16.65■□□□□ 0.26
VRK3-225ENST00000601912 DNAJB5O75953 348 aa16.65■□□□□ 0.26
VRK3-225ENST00000601912 RASAL1O95294 804 aa16.65■□□□□ 0.26
VRK3-225ENST00000601912 RAB40ALP0C0E4 278 aa16.65■□□□□ 0.26
VRK3-225ENST00000601912 TCN2P20062 427 aa16.65■□□□□ 0.26
VRK3-225ENST00000601912 RPS4Y1P22090 263 aaKnown RBP16.65■□□□□ 0.26
VRK3-225ENST00000601912 DNAJA1P31689 397 aaKnown RBP16.65■□□□□ 0.26
VRK3-225ENST00000601912 HSPA13P48723 471 aa16.65■□□□□ 0.26
VRK3-225ENST00000601912 PSPHP78330 225 aa16.65■□□□□ 0.26
VRK3-225ENST00000601912 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.65■□□□□ 0.26
VRK3-225ENST00000601912 HSDL2Q6YN16 418 aa16.65■□□□□ 0.26
VRK3-225ENST00000601912 TIPARPQ7Z3E1 657 aaKnown RBP16.65■□□□□ 0.26
VRK3-225ENST00000601912 TSEN54Q7Z6J9 526 aaKnown RBP16.65■□□□□ 0.26
VRK3-225ENST00000601912 STK32CQ86UX6 486 aa16.65■□□□□ 0.26
VRK3-225ENST00000601912 C17orf47Q8NEP4 570 aa16.65■□□□□ 0.26
VRK3-225ENST00000601912 PHOX2BQ99453 314 aa16.65■□□□□ 0.26
VRK3-225ENST00000601912 SLC29A1Q99808 456 aa16.65■□□□□ 0.26
VRK3-225ENST00000601912 NXF5Q9H1B4 397 aaKnown RBP16.65■□□□□ 0.26
VRK3-225ENST00000601912 FOXJ2Q9P0K8 574 aa16.65■□□□□ 0.26
VRK3-225ENST00000601912 LOC102723996A0A087X1L8 192 aa16.64■□□□□ 0.25
VRK3-225ENST00000601912 UGT2B17O75795 530 aa16.64■□□□□ 0.25
VRK3-225ENST00000601912 SEC24DO94855 1032 aaPredicted RBP16.64■□□□□ 0.25
VRK3-225ENST00000601912 UMODP07911 640 aa16.64■□□□□ 0.25
VRK3-225ENST00000601912 RRM2P31350 389 aa16.64■□□□□ 0.25
VRK3-225ENST00000601912 DCTP40126 519 aa16.64■□□□□ 0.25
VRK3-225ENST00000601912 YAP1P46937 504 aaKnown RBP16.64■□□□□ 0.25
VRK3-225ENST00000601912 NOVA1P51513 510 aaKnown RBP16.64■□□□□ 0.25
VRK3-225ENST00000601912 IST1P53990 364 aa16.64■□□□□ 0.25
VRK3-225ENST00000601912 TAF11Q15544 211 aa16.64■□□□□ 0.25
VRK3-225ENST00000601912 OTUD3Q5T2D3 398 aaPredicted RBP16.64■□□□□ 0.25
VRK3-225ENST00000601912 SHQ1Q6PI26 577 aaKnown RBP16.64■□□□□ 0.25
VRK3-225ENST00000601912 DEF8Q6ZN54 512 aa16.64■□□□□ 0.25
VRK3-225ENST00000601912 APCDD1LQ8NCL9 501 aa16.64■□□□□ 0.25
VRK3-225ENST00000601912 C8orf44Q96CB5 159 aa16.64■□□□□ 0.25
VRK3-225ENST00000601912 NRBF2Q96F24 287 aa16.64■□□□□ 0.25
VRK3-225ENST00000601912 WDR77Q9BQA1 342 aaPredicted RBP16.64■□□□□ 0.25
VRK3-225ENST00000601912 TESMINQ9Y4I5 508 aa16.64■□□□□ 0.25
VRK3-225ENST00000601912 PCDHGA10Q9Y5H3 936 aa16.64■□□□□ 0.25
VRK3-225ENST00000601912 NINQ8N4C6 2090 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 M0R3H8 397 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 PEX12O00623 359 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 EI24O14681 340 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 TM4SF5O14894 197 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 IGKV1D-16P01601 117 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 NID1P14543 1247 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 FPR1P21462 350 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 KRT20P35900 424 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 RPS15P62841 145 aaKnown RBP16.63■□□□□ 0.25
VRK3-225ENST00000601912 RNF4P78317 190 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 SPIBQ01892 262 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 ZNF836Q6ZNA1 936 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 NLGN4XQ8N0W4 816 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 ZSCAN1Q8NBB4 408 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 NLGN4YQ8NFZ3 816 aaPredicted RBP16.63■□□□□ 0.25
VRK3-225ENST00000601912 CT55Q8WUE5 264 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 HSPBAP1Q96EW2 488 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 EPYCQ99645 322 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 ARHGDIGQ99819 225 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 MESP1Q9BRJ9 268 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 HOXD1Q9GZZ0 328 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 AK5Q9Y6K8 562 aa16.63■□□□□ 0.25
VRK3-225ENST00000601912 NPIPA5A0A0B4J1W7 369 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 NPIPA7E9PJI5 369 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 TNFRSF11BO00300 401 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 TO15178 435 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 IL33O95760 270 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 EPPINO95925 133 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 NPIPA8P0DM63 369 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 MMP11P24347 488 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 NR0B1P51843 470 aaKnown RBP16.62■□□□□ 0.25
VRK3-225ENST00000601912 ATP12AP54707 1039 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 SLC26A5P58743 744 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 EEF1A1P68104 462 aaKnown RBP16.62■□□□□ 0.25
VRK3-225ENST00000601912 PPP1R8Q12972 351 aaKnown RBP16.62■□□□□ 0.25
VRK3-225ENST00000601912 GK3PQ14409 553 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 MAPK14Q16539 360 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 RNF220Q5VTB9 566 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 FAM69BQ5VUD6 431 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 TCTN3Q6NUS6 607 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 ZAR1Q86SH2 424 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 COMTD1Q86VU5 262 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 CLIP4Q8N3C7 705 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 GALNT15Q8N3T1 639 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 OR4D11Q8NGI4 311 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 OR5L2Q8NGL0 311 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 OR8K3Q8NH51 312 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 MAGEE2Q8TD90 523 aaPredicted RBP16.62■□□□□ 0.25
VRK3-225ENST00000601912 TP53INP1Q96A56 240 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 OSBPL10Q9BXB5 764 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 EVA1AQ9H8M9 152 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 VNN3Q9NY84 501 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 TCFL5Q9UL49 500 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 FARSAQ9Y285 508 aaKnown RBP16.62■□□□□ 0.25
VRK3-225ENST00000601912 J3KTA2 159 aa16.62■□□□□ 0.25
VRK3-225ENST00000601912 DLL1O00548 723 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 147 ms