RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 BSCL2Q96G97 398 aaPredicted RBP4.28□□□□□ -1.72
SMAD4-216ENST00000593223 CPNE1Q99829 537 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 ADNPQ9H2P0 1102 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 FZD8Q9H461 694 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 AUNIPQ9H7T9 357 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 SLCO1C1Q9NYB5 712 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 EPHA6Q9UF33 1036 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 C19orf25Q9UFG5 118 aaPredicted RBP4.28□□□□□ -1.72
SMAD4-216ENST00000593223 PLCL2Q9UPR0 1127 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 FAM208BQ5VWN6 2430 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 USP9XQ93008 2570 aaPredicted RBP4.28□□□□□ -1.72
SMAD4-216ENST00000593223 RIC1Q4ADV7 1423 aa4.28□□□□□ -1.72
SMAD4-216ENST00000593223 SH3TC1Q8TE82 1336 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 IGKV3D-15A0A087WSY6 115 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 FAM149AA5PLN7 773 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 TCP11X1B4DZS4 312 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 CLDN4O14493 209 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 ARPC2O15144 300 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 MAGEB2O15479 319 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 ARHGEF9O43307 516 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 SELENOFO60613 162 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 CSDE1O75534 798 aaKnown RBP4.27□□□□□ -1.73
SMAD4-216ENST00000593223 GLCEO94923 617 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 TGM6O95932 706 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 IGFBP1P08833 259 aaPredicted RBP4.27□□□□□ -1.73
SMAD4-216ENST00000593223 OR8G3PP0DMU2 310 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 SAGP10523 405 aaPredicted RBP4.27□□□□□ -1.73
SMAD4-216ENST00000593223 SLC2A3P11169 496 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 ZNF18P17022 549 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 CAPN2P17655 700 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 CD22P20273 847 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 ATP6V1C1P21283 382 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 MSR1P21757 451 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 AXLP30530 894 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 PTGER4P35408 488 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 ETV5P41161 510 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 LEPRP48357 1165 aaKnown RBP4.27□□□□□ -1.73
SMAD4-216ENST00000593223 GSCP56915 257 aaPredicted RBP4.27□□□□□ -1.73
SMAD4-216ENST00000593223 DSTNP60981 165 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 CSTF1Q05048 431 aaKnown RBP4.27□□□□□ -1.73
SMAD4-216ENST00000593223 PPIDQ08752 370 aaKnown RBP4.27□□□□□ -1.73
SMAD4-216ENST00000593223 BTG3Q14201 252 aaPredicted RBP4.27□□□□□ -1.73
SMAD4-216ENST00000593223 MAPRE2Q15555 327 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 USF2Q15853 346 aaPredicted RBP4.27□□□□□ -1.73
SMAD4-216ENST00000593223 RGS21Q2M5E4 152 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 SLC25A53Q5H9E4 307 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 KCTD11Q693B1 232 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 TXNRD3NBQ6F5E7 133 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 TMEM182Q6ZP80 229 aaPredicted RBP4.27□□□□□ -1.73
SMAD4-216ENST00000593223 TRMT11Q7Z4G4 463 aaKnown RBP4.27□□□□□ -1.73
SMAD4-216ENST00000593223 UBE2J2Q8N2K1 259 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 RYBPQ8N488 228 aaPredicted RBP4.27□□□□□ -1.73
SMAD4-216ENST00000593223 STKLD1Q8NE28 680 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 HEXDCQ8WVB3 486 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 CIDECQ96AQ7 238 aaPredicted RBP4.27□□□□□ -1.73
SMAD4-216ENST00000593223 SLCO4A1Q96BD0 722 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 AP2M1Q96CW1 435 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 PANX3Q96QZ0 392 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 FEVQ99581 238 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 CHP1Q99653 195 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 TSG101Q99816 390 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 SPAG8Q99932 426 aaPredicted RBP4.27□□□□□ -1.73
SMAD4-216ENST00000593223 FUCA2Q9BTY2 467 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 KATNB1Q9BVA0 655 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 NUP58Q9BVL2 599 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 DNTTIP1Q9H147 329 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 C11orf49Q9H6J7 331 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 COG4Q9H9E3 785 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 LMAN1LQ9HAT1 526 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 CYP3A43Q9HB55 503 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 CDH20Q9HBT6 801 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 NEK6Q9HC98 313 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 VAT1LQ9HCJ6 419 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 CHST11Q9NPF2 352 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 DDX28Q9NUL7 540 aaKnown RBP4.27□□□□□ -1.73
SMAD4-216ENST00000593223 RNF215Q9Y6U7 377 aa4.27□□□□□ -1.73
SMAD4-216ENST00000593223 RIF1Q5UIP0 2472 aaKnown RBP4.27□□□□□ -1.73
SMAD4-216ENST00000593223 PFASO15067 1338 aa4.26□□□□□ -1.73
SMAD4-216ENST00000593223 COL4A6Q14031 1691 aa4.26□□□□□ -1.73
SMAD4-216ENST00000593223 WDR87Q6ZQQ6 2873 aa4.26□□□□□ -1.73
SMAD4-216ENST00000593223 ZFYVE26Q68DK2 2539 aa4.26□□□□□ -1.73
SMAD4-216ENST00000593223 A0A087X002 238 aa4.26□□□□□ -1.73
SMAD4-216ENST00000593223 MEI4A8MW99 385 aa4.26□□□□□ -1.73
SMAD4-216ENST00000593223 H3BMM5 538 aa4.26□□□□□ -1.73
SMAD4-216ENST00000593223 ZNF701M0R085 212 aaPredicted RBP4.26□□□□□ -1.73
SMAD4-216ENST00000593223 PTGESO14684 152 aa4.26□□□□□ -1.73
SMAD4-216ENST00000593223 DCXO43602 365 aa4.26□□□□□ -1.73
SMAD4-216ENST00000593223 CLN5O75503 358 aa4.26□□□□□ -1.73
SMAD4-216ENST00000593223 RAD51DO75771 328 aa4.26□□□□□ -1.73
SMAD4-216ENST00000593223 CDK14O94921 469 aa4.26□□□□□ -1.73
SMAD4-216ENST00000593223 UGT2B4P06133 528 aa4.26□□□□□ -1.73
SMAD4-216ENST00000593223 ZNF883P0CG24 379 aa4.26□□□□□ -1.73
SMAD4-216ENST00000593223 UMPSP11172 480 aa4.26□□□□□ -1.73
SMAD4-216ENST00000593223 TRIM23P36406 574 aa4.26□□□□□ -1.73
SMAD4-216ENST00000593223 VEGFCP49767 419 aa4.26□□□□□ -1.73
SMAD4-216ENST00000593223 HNRNPFP52597 415 aaKnown RBP4.26□□□□□ -1.73
SMAD4-216ENST00000593223 YWHAGP61981 247 aaKnown RBP eCLIP4.26□□□□□ -1.73
SMAD4-216ENST00000593223 TSPAN5P62079 268 aa4.26□□□□□ -1.73
SMAD4-216ENST00000593223 YWHAEP62258 255 aaKnown RBP4.26□□□□□ -1.73
SMAD4-216ENST00000593223 POLR2LP62875 67 aaKnown RBP4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms