RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 LSAMPQ13449 338 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 DSG2Q14126 1118 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 ZNF267Q14586 743 aaPredicted RBP13.18□□□□□ -0.3
LIG3-205ENST00000585941 KCNAB1Q14722 419 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 SYT16Q17RD7 645 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 CCNJQ5T5M9 372 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 PEAR1Q5VY43 1037 aaPredicted RBP13.18□□□□□ -0.3
LIG3-205ENST00000585941 GTF2IRD2BQ6EKJ0 949 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 TMEM71Q6P5X7 295 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 DGAT2L6Q6ZPD8 337 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 TTLL10Q6ZVT0 673 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 PTCHD4Q6ZW05 846 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 GTF2IRD2Q86UP8 949 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 SHISA5Q8N114 240 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 FAM181AQ8N9Y4 354 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 ZFAND2BQ8WV99 257 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 ACOT11Q8WXI4 607 aaPredicted RBP13.18□□□□□ -0.3
LIG3-205ENST00000585941 SLC35B4Q969S0 331 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 CCDC74AQ96AQ1 378 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 Q96MT0 163 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 VSTM2LQ96N03 204 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 DPYSL5Q9BPU6 564 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 G6PC3Q9BUM1 346 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 Q9N2J8 555 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 CLN6Q9NWW5 311 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 ZNF226Q9NYT6 803 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 ERVK-18Q9QC07 812 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 PRODH2Q9UF12 536 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 PSORS1C1Q9UIG5 152 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 CLDN16Q9Y5I7 305 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 CDHR4A6H8M9 788 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 CPSF4LA6NMK7 179 aaKnown RBP13.18□□□□□ -0.3
LIG3-205ENST00000585941 CLCA1A8K7I4 914 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 ZNF99A8MXY4 864 aaPredicted RBP13.18□□□□□ -0.3
LIG3-205ENST00000585941 H3BN98 237 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 DSCR3O14972 297 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 TPST2O60704 377 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 TRMUO75648 421 aaKnown RBP13.18□□□□□ -0.3
LIG3-205ENST00000585941 CDC123O75794 336 aaPredicted RBP13.18□□□□□ -0.3
LIG3-205ENST00000585941 IFNA16P05015 189 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 MMP11P24347 488 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 POU1F1P28069 291 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 SLC5A2P31639 672 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 CNR2P34972 360 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 GSSP48637 474 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 SNRPGP62308 76 aaKnown RBP13.18□□□□□ -0.3
LIG3-205ENST00000585941 BTG2P78543 158 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 PSG6Q00889 435 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 EMX1Q04741 257 aaPredicted RBP13.18□□□□□ -0.3
LIG3-205ENST00000585941 GPR107Q5VW38 600 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 CASP12Q6UXS9 341 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 ZNF730Q6ZMV8 503 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 QSOX2Q6ZRP7 698 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 ZER1Q7Z7L7 766 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 OR1L3Q8NH93 324 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 PIGXQ8TBF5 258 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 SAP25Q8TEE9 199 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 DOK4Q8TEW6 326 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 OIT3Q8WWZ8 545 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 SGCDQ92629 289 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 FCGR1BQ92637 280 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 RORBQ92753 470 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 UBE2FQ969M7 185 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 LHPPQ9H008 270 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 LANCL2Q9NS86 450 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 SEMA4GQ9NTN9 838 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 TESQ9UGI8 421 aaKnown RBP13.18□□□□□ -0.3
LIG3-205ENST00000585941 PCDHGA10Q9Y5H3 936 aa13.18□□□□□ -0.3
LIG3-205ENST00000585941 NUP210LQ5VU65 1888 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 ASXL3Q9C0F0 2248 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 A0A087WUU8 490 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 GXYLT2A0PJZ3 443 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 TRAPPC13A5PLN9 417 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 FRS3O43559 492 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 PDGFBP01127 241 aaPredicted RBP13.17□□□□□ -0.3
LIG3-205ENST00000585941 ANKRD34CP0C6C1 535 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 MAOAP21397 527 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 ALAS2P22557 587 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 PEX19P40855 299 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 CSTF1Q05048 431 aaKnown RBP13.17□□□□□ -0.3
LIG3-205ENST00000585941 TSPAN31Q12999 210 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 ERV3-1Q14264 604 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 SMN1Q16637 294 aaKnown RBP13.17□□□□□ -0.3
LIG3-205ENST00000585941 FLYWCH1Q4VC44 716 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 SNAP47Q5SQN1 464 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 MRPL2Q5T653 305 aaKnown RBP13.17□□□□□ -0.3
LIG3-205ENST00000585941 C12orf73Q69YU5 71 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 LAIR1Q6GTX8 287 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 FIGNL1Q6PIW4 674 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 GRAMD2AQ8IUY3 354 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 C1orf210Q8IVY1 113 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 CEP76Q8TAP6 659 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 RAB2BQ8WUD1 216 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 PIGKQ92643 395 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 NAT6Q93015 286 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 SLC41A3Q96GZ6 507 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 ZC3H10Q96K80 434 aaKnown RBP13.17□□□□□ -0.3
LIG3-205ENST00000585941 SIGLEC11Q96RL6 698 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 BCL7BQ9BQE9 202 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 COPS4Q9BT78 406 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms