RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 KCMF1Q9P0J7 381 aa21.28■■□□□ 1
VPS53-211ENST00000571805 DOCK8Q8NF50 2099 aa21.27■■□□□ 1
VPS53-211ENST00000571805 REV3LO60673 3130 aa21.27■■□□□ 1
VPS53-211ENST00000571805 BTN3A3O00478 584 aa21.27■■□□□ 1
VPS53-211ENST00000571805 POLR1CO15160 346 aaPredicted RBP21.27■■□□□ 1
VPS53-211ENST00000571805 OR5F1O95221 314 aa21.27■■□□□ 1
VPS53-211ENST00000571805 CA3P07451 260 aa21.27■■□□□ 1
VPS53-211ENST00000571805 RCVRNP35243 200 aa21.27■■□□□ 1
VPS53-211ENST00000571805 SEC13P55735 322 aa21.27■■□□□ 1
VPS53-211ENST00000571805 CAV3P56539 151 aa21.27■■□□□ 1
VPS53-211ENST00000571805 PGGHGQ32M88 737 aa21.27■■□□□ 1
VPS53-211ENST00000571805 PPP2R2DQ66LE6 453 aa21.27■■□□□ 1
VPS53-211ENST00000571805 LRRC25Q8N386 305 aaPredicted RBP21.27■■□□□ 1
VPS53-211ENST00000571805 ARIH2OSQ8N7S6 290 aa21.27■■□□□ 1
VPS53-211ENST00000571805 MS4A4EQ96PG1 132 aa21.27■■□□□ 1
VPS53-211ENST00000571805 ZNF221Q9UK13 617 aa21.27■■□□□ 1
VPS53-211ENST00000571805 KIR2DL1P43626 348 aaPredicted RBP21.26■□□□□ 0.99
VPS53-211ENST00000571805 RPS15AP62244 130 aaKnown RBP21.26■□□□□ 0.99
VPS53-211ENST00000571805 ZNF362Q5T0B9 420 aaPredicted RBP21.26■□□□□ 0.99
VPS53-211ENST00000571805 ATAD3CQ5T2N8 411 aa21.26■□□□□ 0.99
VPS53-211ENST00000571805 NUDT18Q6ZVK8 323 aa21.26■□□□□ 0.99
VPS53-211ENST00000571805 CAMKK1Q8N5S9 505 aa21.26■□□□□ 0.99
VPS53-211ENST00000571805 BBS1Q8NFJ9 593 aa21.26■□□□□ 0.99
VPS53-211ENST00000571805 NT5CQ8TCD5 201 aa21.26■□□□□ 0.99
VPS53-211ENST00000571805 TRIM45Q9H8W5 580 aaPredicted RBP21.26■□□□□ 0.99
VPS53-211ENST00000571805 CBLCQ9ULV8 474 aa21.26■□□□□ 0.99
VPS53-211ENST00000571805 TMCC2O75069 709 aa21.26■□□□□ 0.99
VPS53-211ENST00000571805 SLC2A10O95528 541 aa21.26■□□□□ 0.99
VPS53-211ENST00000571805 IGHA1P01876 353 aa21.26■□□□□ 0.99
VPS53-211ENST00000571805 KRT8P05787 483 aa21.26■□□□□ 0.99
VPS53-211ENST00000571805 TNFRSF17Q02223 184 aa21.26■□□□□ 0.99
VPS53-211ENST00000571805 DSG2Q14126 1118 aa21.26■□□□□ 0.99
VPS53-211ENST00000571805 TMEM44Q2T9K0 475 aa21.26■□□□□ 0.99
VPS53-211ENST00000571805 FBXO42Q6P3S6 717 aa21.26■□□□□ 0.99
VPS53-211ENST00000571805 ASPGQ86U10 573 aa21.26■□□□□ 0.99
VPS53-211ENST00000571805 AP3S1Q92572 193 aa21.26■□□□□ 0.99
VPS53-211ENST00000571805 COL26A1Q96A83 441 aa21.26■□□□□ 0.99
VPS53-211ENST00000571805 TP63Q9H3D4 680 aaPredicted RBP21.26■□□□□ 0.99
VPS53-211ENST00000571805 CLCA2Q9UQC9 943 aa21.26■□□□□ 0.99
VPS53-211ENST00000571805 N6AMT1Q9Y5N5 214 aa21.26■□□□□ 0.99
VPS53-211ENST00000571805 TBC1D3KA0A087X1G2 549 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 PRSS38A1L453 326 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 TBC1D3FA6NER0 549 aaPredicted RBP21.25■□□□□ 0.99
VPS53-211ENST00000571805 K7EQS6 105 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 CDC42EP2O14613 210 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 SLC31A1O15431 190 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 ACSM1Q08AH1 577 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 TBC1D3GQ6DHY5 549 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 FBXO46Q6PJ61 603 aaPredicted RBP21.25■□□□□ 0.99
VPS53-211ENST00000571805 ZNF836Q6ZNA1 936 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 OR2L13Q8N349 312 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 CAPSLQ8WWF8 208 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 KIAA1143Q96AT1 154 aaPredicted RBP21.25■□□□□ 0.99
VPS53-211ENST00000571805 KXD1Q9BQD3 176 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 SLC22A4Q9H015 551 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 MMP28Q9H239 520 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 IL20RAQ9UHF4 553 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 MEIOCA2RUB1 952 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 HTR1FP30939 366 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 ADPRHP54922 357 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 FZD5Q13467 585 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 ARHGAP11BQ3KRB8 267 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 PDZK1Q5T2W1 519 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 TOR1AIP2Q8NFQ8 470 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 ST6GAL2Q96JF0 529 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 OR2M4Q96R27 311 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 C1QTNF7Q9BXJ2 289 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 C11orf54Q9H0W9 315 aaPredicted RBP21.25■□□□□ 0.99
VPS53-211ENST00000571805 NLGN3Q9NZ94 848 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 SLC7A7Q9UM01 511 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 WDR45Q9Y484 360 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 CDH10Q9Y6N8 788 aa21.25■□□□□ 0.99
VPS53-211ENST00000571805 CENPVL1A0A0U1RR11 272 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 DNAJB6O75190 326 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 AGR2O95994 175 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 SMIM10L1P0DMW3 83 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 GAAP10253 952 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 CPN2P22792 545 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 ZNF136P52737 540 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 RGS1Q08116 209 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 DUSP5Q16690 384 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 SLC35F1Q5T1Q4 408 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 FAM109BQ6ICB4 259 aaPredicted RBP21.24■□□□□ 0.99
VPS53-211ENST00000571805 LSRQ86X29 649 aaPredicted RBP21.24■□□□□ 0.99
VPS53-211ENST00000571805 OR4N5Q8IXE1 308 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 SLC7A5P1Q8MH63 180 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 FLVCR1-AS1Q8TAF5 88 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 TM4SF19Q96DZ7 209 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 SMIM10Q96HG1 83 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 SOSTQ9BQB4 213 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 TEX12Q9BXU0 123 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 ZNF624Q9P2J8 865 aaPredicted RBP21.24■□□□□ 0.99
VPS53-211ENST00000571805 CSNK1G3Q9Y6M4 447 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 UNC80Q8N2C7 3258 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 TBC1D3DA0A087WVF3 549 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 TBC1D3IA0A087WXS9 549 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 TBC1D3EA0A087X179 549 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 POM121BA6NF01 834 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 TBC1D3LB9A6J9 549 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 TBC1D3HP0C7X1 549 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms