RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 ENPP6Q6UWR7 440 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 MARCH3Q86UD3 253 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 LACC1Q8IV20 430 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 ZNF295-AS1Q8N0V1 137 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 CDRT4Q8N9R6 151 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 GIMAP5Q96F15 307 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 CHMP6Q96FZ7 201 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 C16orf58Q96GQ5 468 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 MS4A4EQ96PG1 132 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 SORT1Q99523 831 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 SPOCK3Q9BQ16 436 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 RTN4RQ9BZR6 473 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 SDHAF3Q9NRP4 125 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 ZCCHC3Q9NUD5 404 aaKnown RBP14.23□□□□□ -0.13
VPS39-203ENST00000561797 MED11Q9P086 117 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 ABCG2Q9UNQ0 655 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 RPH3AQ9Y2J0 694 aaPredicted RBP14.23□□□□□ -0.13
VPS39-203ENST00000561797 SNX8Q9Y5X2 465 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 HSPB2A8KAH6 182 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 IL2RAP01589 272 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 ALOX5P09917 674 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 PRPS1L1P21108 318 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 MSX1P28360 303 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 MAP3K8P41279 467 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 EMX2Q04743 252 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 MLC1Q15049 377 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 HSPB2Q16082 182 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 PGS1Q32NB8 556 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 GRAMD1BQ3KR37 738 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 MFSD12Q6NUT3 480 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 FIGNL1Q6PIW4 674 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 SLC16A11Q8NCK7 471 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 NAXEQ8NCW5 288 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 OR2M3Q8NG83 312 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 MGARPQ8TDB4 240 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 DUSP19Q8WTR2 217 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 JADE3Q92613 823 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 HOXB13Q92826 284 aaPredicted RBP14.22□□□□□ -0.13
VPS39-203ENST00000561797 FAM120BQ96EK7 910 aaKnown RBP14.22□□□□□ -0.13
VPS39-203ENST00000561797 DTNBP1Q96EV8 351 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 SFXN2Q96NB2 322 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 PRPF18Q99633 342 aaKnown RBP14.22□□□□□ -0.13
VPS39-203ENST00000561797 TBL1XR1Q9BZK7 514 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 AKTIPQ9H8T0 292 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 SIRT3Q9NTG7 399 aaPredicted RBP14.22□□□□□ -0.13
VPS39-203ENST00000561797 ATAD3AQ9NVI7 634 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 PNPOQ9NVS9 261 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 FAM120CQ9NX05 1096 aaKnown RBP14.22□□□□□ -0.13
VPS39-203ENST00000561797 NOP53Q9NZM5 478 aaKnown RBP14.22□□□□□ -0.13
VPS39-203ENST00000561797 NTMQ9P121 344 aa14.22□□□□□ -0.13
VPS39-203ENST00000561797 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.22□□□□□ -0.13
VPS39-203ENST00000561797 TEX15Q9BXT5 2789 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 H0Y3Z8 333 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 CFLARO15519 480 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 GMFGO60234 142 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 ZIC3O60481 467 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 C6orf47O95873 294 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 HMGN2P05204 90 aaKnown RBP14.21□□□□□ -0.13
VPS39-203ENST00000561797 CPN1P15169 458 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 HK1P19367 917 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 CEACAM8P31997 349 aaPredicted RBP14.21□□□□□ -0.13
VPS39-203ENST00000561797 PRIM2P49643 509 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 GFRA1P56159 465 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 DSCR4P56555 118 aaPredicted RBP14.21□□□□□ -0.13
VPS39-203ENST00000561797 PRR5P85299 388 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 BST1Q10588 318 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 RCAN2Q14206 197 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 DUSP5Q16690 384 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 LSM12Q3MHD2 195 aaKnown RBP14.21□□□□□ -0.13
VPS39-203ENST00000561797 NSUN5P2Q63ZY6 315 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 AAGABQ6PD74 315 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 RIMKLAQ8IXN7 391 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 FADS6Q8N9I5 356 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 ACBD4Q8NC06 268 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 OR5P2Q8WZ92 322 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 COQ8BQ96D53 544 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 TUBA1CQ9BQE3 449 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 DUSP26Q9BV47 211 aa14.21□□□□□ -0.13
VPS39-203ENST00000561797 MRPS18CQ9Y3D5 142 aaKnown RBP14.21□□□□□ -0.13
VPS39-203ENST00000561797 TMEM120BA0PK00 339 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 KCNK2O95069 426 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 SNUPNO95149 360 aaKnown RBP14.2□□□□□ -0.14
VPS39-203ENST00000561797 ANGPTL1O95841 491 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 BMP5P22003 454 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 TIMP3P35625 211 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 CCT3P49368 545 aaKnown RBP14.2□□□□□ -0.14
VPS39-203ENST00000561797 DIO3P55073 304 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 CLDN8P56748 225 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 WDR4P57081 412 aaKnown RBP14.2□□□□□ -0.14
VPS39-203ENST00000561797 TP53BP2Q13625 1128 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 LASP1Q14847 261 aaKnown RBP14.2□□□□□ -0.14
VPS39-203ENST00000561797 SMU1Q2TAY7 513 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 SLC25A35Q3KQZ1 300 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 SPDYE7PQ495Y7 208 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 BEND6Q5SZJ8 279 aaPredicted RBP14.2□□□□□ -0.14
VPS39-203ENST00000561797 CCNJQ5T5M9 372 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 ZCCHC12Q6PEW1 402 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 PLXDC2Q6UX71 529 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 APOOLQ6UXV4 268 aa14.2□□□□□ -0.14
VPS39-203ENST00000561797 ZAR1Q86SH2 424 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms