RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 CCL27Q9Y4X3 112 aa17.16■□□□□ 0.34
VPS35-202ENST00000561713 A0A087WV62 115 aa17.15■□□□□ 0.34
VPS35-202ENST00000561713 GXYLT2A0PJZ3 443 aa17.15■□□□□ 0.34
VPS35-202ENST00000561713 SHISA8B8ZZ34 492 aa17.15■□□□□ 0.34
VPS35-202ENST00000561713 COPEO14579 308 aa17.15■□□□□ 0.34
VPS35-202ENST00000561713 SEC14L5O43304 696 aa17.15■□□□□ 0.34
VPS35-202ENST00000561713 EFNA1P20827 205 aaPredicted RBP17.15■□□□□ 0.34
VPS35-202ENST00000561713 GSTM5P46439 218 aa17.15■□□□□ 0.34
VPS35-202ENST00000561713 PCLAFQ15004 111 aa17.15■□□□□ 0.34
VPS35-202ENST00000561713 ZNF385BQ569K4 471 aa17.15■□□□□ 0.34
VPS35-202ENST00000561713 Q5PR19 223 aa17.15■□□□□ 0.34
VPS35-202ENST00000561713 SZRD1Q7Z422 152 aa17.15■□□□□ 0.34
VPS35-202ENST00000561713 TRIM46Q7Z4K8 759 aa17.15■□□□□ 0.34
VPS35-202ENST00000561713 C10orf107Q8IVU9 208 aa17.15■□□□□ 0.34
VPS35-202ENST00000561713 OR2L13Q8N349 312 aa17.15■□□□□ 0.34
VPS35-202ENST00000561713 FADS6Q8N9I5 356 aa17.15■□□□□ 0.34
VPS35-202ENST00000561713 SMPDL3BQ92485 455 aa17.15■□□□□ 0.34
VPS35-202ENST00000561713 COX4I2Q96KJ9 171 aa17.15■□□□□ 0.34
VPS35-202ENST00000561713 TM9SF2Q99805 663 aa17.15■□□□□ 0.34
VPS35-202ENST00000561713 OXSMQ9NWU1 459 aa17.15■□□□□ 0.34
VPS35-202ENST00000561713 FBN1P35555 2871 aaKnown RBP17.15■□□□□ 0.34
VPS35-202ENST00000561713 HEATR5AQ86XA9 2040 aa17.14■□□□□ 0.34
VPS35-202ENST00000561713 FAM171A2A8MVW0 826 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 TMEM233B4DJY2 109 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 PDPK1O15530 556 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 ARHGEF9O43307 516 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 AKAP10O43572 662 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 FADS1O60427 444 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 SEC22BO75396 215 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 RCBTB2O95199 551 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 IGKV1D-16P01601 117 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 CPA3P15088 417 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 HK1P19367 917 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 CRHR1P34998 444 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 DNAJB13P59910 316 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 RPL38P63173 70 aaKnown RBP17.14■□□□□ 0.33
VPS35-202ENST00000561713 SIRPAP78324 504 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 GAB1Q13480 694 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 CCDC153Q494R4 210 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 VWA1Q6PCB0 445 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 P4HA3Q7Z4N8 544 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 MARCH3Q86UD3 253 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 P3H2Q8IVL5 708 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 PIK3R3Q92569 461 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 WNT2BQ93097 391 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 ELP4Q96EB1 424 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 OTUB1Q96FW1 271 aaPredicted RBP17.14■□□□□ 0.33
VPS35-202ENST00000561713 TSSK3Q96PN8 268 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 LRTM1Q9HBL6 345 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 Q9N2J8 555 aa17.14■□□□□ 0.33
VPS35-202ENST00000561713 RRAGDQ9NQL2 400 aaPredicted RBP17.14■□□□□ 0.33
VPS35-202ENST00000561713 TNFSF12-TNFSF13A0A0A6YY99 330 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 A0A1W2PNV4 684 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 H3BML4 177 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 H7C1Q1 480 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 HCRTR2O43614 444 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 TNFSF13O75888 250 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 UROSP10746 265 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 SDC1P18827 310 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 KRT4P19013 534 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 PCSK6P29122 969 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 DSCR4P56555 118 aaPredicted RBP17.13■□□□□ 0.33
VPS35-202ENST00000561713 MRPS22P82650 360 aaKnown RBP17.13■□□□□ 0.33
VPS35-202ENST00000561713 DECR1Q16698 335 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 LIPMQ5VYY2 423 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 IKBIPQ70UQ0 350 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 CNEP1R1Q8N9A8 125 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 OR2W6PQ8NHA6 318 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 FIG4Q92562 907 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 ZFP3Q96NJ6 502 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 GATA5Q9BWX5 397 aaPredicted RBP17.13■□□□□ 0.33
VPS35-202ENST00000561713 TUBB1Q9H4B7 451 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 GIMAP2Q9UG22 337 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 PACSIN3Q9UKS6 424 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 GRID1Q9ULK0 1009 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 ABCG2Q9UNQ0 655 aa17.13■□□□□ 0.33
VPS35-202ENST00000561713 SLC22A20A6NK97 555 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 CASKO14936 926 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 SMPD2O60906 423 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 SMNDC1O75940 238 aaKnown RBP eCLIP17.12■□□□□ 0.33
VPS35-202ENST00000561713 UTS2O95399 124 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 CHMP24386 653 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 GABRA3P34903 492 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 GPC1P35052 558 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 CLDN15P56746 228 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 CLDN20P56880 219 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 KIAA0040Q15053 153 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 ZNHIT3Q15649 155 aaPredicted RBP17.12■□□□□ 0.33
VPS35-202ENST00000561713 GRAMD1BQ3KR37 738 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 CYP27C1Q4G0S4 372 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 EXOC3L1Q86VI1 746 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 GATSQ8NAP1 163 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 FAM76AQ8TAV0 307 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 ZNF845Q96IR2 970 aaPredicted RBP17.12■□□□□ 0.33
VPS35-202ENST00000561713 Q96MF0 132 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 LMF2Q9BU23 707 aaKnown RBP17.12■□□□□ 0.33
VPS35-202ENST00000561713 MECRQ9BV79 373 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 PINK1Q9BXM7 581 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 C1orf109Q9NX04 203 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 FAM120CQ9NX05 1096 aaKnown RBP17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms