RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 ZDHHC2Q9UIJ5 367 aa16.04■□□□□ 0.16
HDDC3-205ENST00000559898 ZNF337Q9Y3M9 751 aa16.04■□□□□ 0.16
HDDC3-205ENST00000559898 TRAF6Q9Y4K3 522 aa16.04■□□□□ 0.16
HDDC3-205ENST00000559898 ZNF469Q96JG9 3925 aaPredicted RBP16.04■□□□□ 0.16
HDDC3-205ENST00000559898 NUP214P35658 2090 aaPredicted RBP16.03■□□□□ 0.16
HDDC3-205ENST00000559898 FAM221AA4D161 298 aa16.03■□□□□ 0.16
HDDC3-205ENST00000559898 H3BQF6 201 aa16.03■□□□□ 0.16
HDDC3-205ENST00000559898 NPHS1O60500 1241 aa16.03■□□□□ 0.16
HDDC3-205ENST00000559898 LYPLA1O75608 230 aaPredicted RBP16.03■□□□□ 0.16
HDDC3-205ENST00000559898 UTS2O95399 124 aa16.03■□□□□ 0.16
HDDC3-205ENST00000559898 HK1P19367 917 aa16.03■□□□□ 0.16
HDDC3-205ENST00000559898 GPC1P35052 558 aa16.03■□□□□ 0.16
HDDC3-205ENST00000559898 FRKP42685 505 aaPredicted RBP16.03■□□□□ 0.16
HDDC3-205ENST00000559898 RNF144AP50876 292 aaPredicted RBP16.03■□□□□ 0.16
HDDC3-205ENST00000559898 RCAN2Q14206 197 aa16.03■□□□□ 0.16
HDDC3-205ENST00000559898 CYP27C1Q4G0S4 372 aa16.03■□□□□ 0.16
HDDC3-205ENST00000559898 RNF165Q6ZSG1 346 aa16.03■□□□□ 0.16
HDDC3-205ENST00000559898 GATSQ8NAP1 163 aa16.03■□□□□ 0.16
HDDC3-205ENST00000559898 SLC16A11Q8NCK7 471 aa16.03■□□□□ 0.16
HDDC3-205ENST00000559898 HOXB13Q92826 284 aaPredicted RBP16.03■□□□□ 0.16
HDDC3-205ENST00000559898 PPCDCQ96CD2 204 aa16.03■□□□□ 0.16
HDDC3-205ENST00000559898 PKNOX2Q96KN3 472 aa16.03■□□□□ 0.16
HDDC3-205ENST00000559898 CCT7Q99832 543 aa16.03■□□□□ 0.16
HDDC3-205ENST00000559898 SIRT3Q9NTG7 399 aaPredicted RBP16.03■□□□□ 0.16
HDDC3-205ENST00000559898 PEX11AO75192 247 aa16.02■□□□□ 0.16
HDDC3-205ENST00000559898 SKAP2O75563 359 aaPredicted RBP16.02■□□□□ 0.16
HDDC3-205ENST00000559898 RCBTB2O95199 551 aa16.02■□□□□ 0.16
HDDC3-205ENST00000559898 SLU7O95391 586 aaKnown RBP16.02■□□□□ 0.16
HDDC3-205ENST00000559898 FGF4P08620 206 aa16.02■□□□□ 0.16
HDDC3-205ENST00000559898 PRPS2P11908 318 aa16.02■□□□□ 0.16
HDDC3-205ENST00000559898 IST1P53990 364 aa16.02■□□□□ 0.16
HDDC3-205ENST00000559898 DSCR4P56555 118 aaPredicted RBP16.02■□□□□ 0.16
HDDC3-205ENST00000559898 CLDN20P56880 219 aa16.02■□□□□ 0.16
HDDC3-205ENST00000559898 MRPS22P82650 360 aaKnown RBP16.02■□□□□ 0.16
HDDC3-205ENST00000559898 DECR1Q16698 335 aa16.02■□□□□ 0.16
HDDC3-205ENST00000559898 FLYWCH1Q4VC44 716 aa16.02■□□□□ 0.16
HDDC3-205ENST00000559898 XKR7Q5GH72 579 aa16.02■□□□□ 0.16
HDDC3-205ENST00000559898 CCNJQ5T5M9 372 aa16.02■□□□□ 0.16
HDDC3-205ENST00000559898 FIGNL1Q6PIW4 674 aa16.02■□□□□ 0.16
HDDC3-205ENST00000559898 LSRQ86X29 649 aaPredicted RBP16.02■□□□□ 0.16
HDDC3-205ENST00000559898 NUP43Q8NFH3 380 aa16.02■□□□□ 0.16
HDDC3-205ENST00000559898 OR6Y1Q8NGX8 325 aa16.02■□□□□ 0.16
HDDC3-205ENST00000559898 OR4C3Q8NH37 302 aa16.02■□□□□ 0.16
HDDC3-205ENST00000559898 GPR151Q8TDV0 419 aa16.02■□□□□ 0.16
HDDC3-205ENST00000559898 FIG4Q92562 907 aa16.02■□□□□ 0.16
HDDC3-205ENST00000559898 SLC9A6Q92581 669 aa16.02■□□□□ 0.16
HDDC3-205ENST00000559898 ZNF845Q96IR2 970 aaPredicted RBP16.02■□□□□ 0.16
HDDC3-205ENST00000559898 POLDIP3Q9BY77 421 aaKnown RBP16.02■□□□□ 0.16
HDDC3-205ENST00000559898 Q9N2J8 555 aa16.02■□□□□ 0.16
HDDC3-205ENST00000559898 RASSF1Q9NS23 344 aa16.02■□□□□ 0.16
HDDC3-205ENST00000559898 WBP11Q9Y2W2 641 aaKnown RBP16.02■□□□□ 0.16
HDDC3-205ENST00000559898 MRPS18CQ9Y3D5 142 aaKnown RBP16.02■□□□□ 0.16
HDDC3-205ENST00000559898 PRRC2AP48634 2157 aaKnown RBP16.02■□□□□ 0.15
HDDC3-205ENST00000559898 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 A0A1W2PPR1 153 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 OR2M5A3KFT3 312 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 A6NNC1 897 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 HCRTR2O43614 444 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 ITM2AO43736 263 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 TYROBPO43914 113 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 TBX19O60806 448 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 TNFSF13O75888 250 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 NKX2-2O95096 273 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 ANGPTL1O95841 491 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 LAMP1P11279 417 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 CHMP24386 653 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 ETV4P43268 484 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 PTGR1Q14914 329 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 DUSP5Q16690 384 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 EXOSC6Q5RKV6 272 aaKnown RBP16.01■□□□□ 0.15
HDDC3-205ENST00000559898 RAET1LQ5VY80 246 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 VWA1Q6PCB0 445 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 ENPP6Q6UWR7 440 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 SZRD1Q7Z422 152 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 KRTCAP2Q8N6L1 136 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.01■□□□□ 0.15
HDDC3-205ENST00000559898 C1GALT1C1Q96EU7 318 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 UCN2Q96RP3 112 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 IQCGQ9H095 443 aaKnown RBP16.01■□□□□ 0.15
HDDC3-205ENST00000559898 CCM2LQ9NUG4 571 aaPredicted RBP16.01■□□□□ 0.15
HDDC3-205ENST00000559898 FAM120CQ9NX05 1096 aaKnown RBP16.01■□□□□ 0.15
HDDC3-205ENST00000559898 GALNT8Q9NY28 637 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 MID2Q9UJV3 735 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 KCNE3Q9Y6H6 103 aa16.01■□□□□ 0.15
HDDC3-205ENST00000559898 H3BML4 177 aa16■□□□□ 0.15
HDDC3-205ENST00000559898 SEC14L5O43304 696 aa16■□□□□ 0.15
HDDC3-205ENST00000559898 SLITRK5O94991 958 aa16■□□□□ 0.15
HDDC3-205ENST00000559898 OPN1LWP04000 364 aa16■□□□□ 0.15
HDDC3-205ENST00000559898 BPGMP07738 259 aa16■□□□□ 0.15
HDDC3-205ENST00000559898 NEFHP12036 1026 aa16■□□□□ 0.15
HDDC3-205ENST00000559898 OPRM1P35372 400 aa16■□□□□ 0.15
HDDC3-205ENST00000559898 ART1P52961 327 aa16■□□□□ 0.15
HDDC3-205ENST00000559898 MANFP55145 182 aaKnown RBP16■□□□□ 0.15
HDDC3-205ENST00000559898 IFFO1Q0D2I5 559 aa16■□□□□ 0.15
HDDC3-205ENST00000559898 MFSD12Q6NUT3 480 aa16■□□□□ 0.15
HDDC3-205ENST00000559898 CDC20BQ86Y33 519 aa16■□□□□ 0.15
HDDC3-205ENST00000559898 GRAMD2AQ8IUY3 354 aa16■□□□□ 0.15
HDDC3-205ENST00000559898 RIBC1Q8N443 379 aaPredicted RBP16■□□□□ 0.15
HDDC3-205ENST00000559898 WNT2BQ93097 391 aa16■□□□□ 0.15
HDDC3-205ENST00000559898 FAM120BQ96EK7 910 aaKnown RBP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms