RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 IL7RP16871 459 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 NT5EP21589 574 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 GABRA4P48169 554 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 COPZ1P61923 177 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 HSD11B2P80365 405 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 ZXDAP98168 799 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 IL5RAQ01344 420 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 MAP4K2Q12851 820 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 DGCR6Q14129 220 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 PUM1Q14671 1186 aaKnown RBP eCLIP11.81□□□□□ -0.52
SHMT2-229ENST00000557348 LARS2Q15031 903 aaKnown RBP11.81□□□□□ -0.52
SHMT2-229ENST00000557348 ZNHIT3Q15649 155 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-229ENST00000557348 CTU2Q2VPK5 515 aaKnown RBP11.81□□□□□ -0.52
SHMT2-229ENST00000557348 DCST1Q5T197 706 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 FHL5Q5TD97 284 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 MED25Q71SY5 747 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 PRSS42Q7Z5A4 293 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 BTLAQ7Z6A9 289 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 GALNT5Q7Z7M9 940 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 OR9A4Q8NGU2 314 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 CAPSLQ8WWF8 208 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 MARVELD3Q96A59 401 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 PRRC1Q96M27 445 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 TGM7Q96PF1 710 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 SIGLEC11Q96RL6 698 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 RACGAP1Q9H0H5 632 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 SLC38A1Q9H2H9 487 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 TP63Q9H3D4 680 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-229ENST00000557348 SOX17Q9H6I2 414 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-229ENST00000557348 MARCH7Q9H992 704 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 ACOT13Q9NPJ3 140 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 EQTNQ9NQ60 294 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 SACM1LQ9NTJ5 587 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 NLGN3Q9NZ94 848 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 RNF215Q9Y6U7 377 aa11.81□□□□□ -0.52
SHMT2-229ENST00000557348 A0A1B0GVT2 93 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 PRAMEF27A3QJZ7 478 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 PRAMEF25A6NGN4 478 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 CENPXA8MT69 81 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 NOTOA8MTQ0 251 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 E9PQ18 207 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 SGK494L7N484 410 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 LAMTOR5O43504 91 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 B4GAT1O43505 415 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 SDC3O75056 442 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 TRIM3O75382 744 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-229ENST00000557348 TNFRSF1BP20333 461 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 TCEA1P23193 301 aaKnown RBP11.8□□□□□ -0.52
SHMT2-229ENST00000557348 IFNGR2P38484 337 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 UGT2B15P54855 530 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 HSD17B7P56937 341 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 IGLV3-21P80748 117 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-229ENST00000557348 CD300CQ08708 224 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 SIGLEC14Q08ET2 396 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 FUT5Q11128 374 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 SERTAD2Q14140 314 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 CDK10Q15131 360 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 LTB4RQ15722 352 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 TBCEQ15813 527 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-229ENST00000557348 ZSWIM7Q19AV6 140 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 PRICKLE4Q2TBC4 344 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 DEFB110Q30KQ9 67 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 ZNF311Q5JNZ3 666 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 EXOSC6Q5RKV6 272 aaKnown RBP11.8□□□□□ -0.52
SHMT2-229ENST00000557348 RSBN1Q5VWQ0 802 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-229ENST00000557348 PMS2CLQ68D20 193 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 LAIR2Q6ISS4 152 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 TCTN3Q6NUS6 607 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 WDR74Q6RFH5 385 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-229ENST00000557348 FAM111BQ6SJ93 734 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 DEF8Q6ZN54 512 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 PRSS41Q7RTY9 318 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 DGLUCYQ7Z3D6 616 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 CTHRC1Q96CG8 243 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 C16orf58Q96GQ5 468 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 YIPF4Q9BSR8 244 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 FNDC11Q9BVV2 318 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 GON7Q9BXV9 100 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 NMNAT1Q9HAN9 279 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-229ENST00000557348 MAT2BQ9NZL9 334 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 MUTYHQ9UIF7 546 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 PMF1-BGLAPU3KQ54 211 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 TTC28Q96AY4 2481 aa11.8□□□□□ -0.52
SHMT2-229ENST00000557348 A0A075B6Q4 140 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 LDB3O75112 727 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 STX11O75558 287 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 DLGAP3O95886 979 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 RECKO95980 971 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 CBLP22681 906 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 ALDH4A1P30038 563 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 SOX6P35712 828 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 GGT2P36268 569 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 DHPSP49366 369 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-229ENST00000557348 CLK1P49759 484 aaKnown RBP11.79□□□□□ -0.52
SHMT2-229ENST00000557348 STX4Q12846 297 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 COX10Q12887 443 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 SLC13A2Q13183 592 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 RAPSNQ13702 412 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 C6orf183Q5T699 404 aa11.79□□□□□ -0.52
SHMT2-229ENST00000557348 LIX1LQ8IVB5 337 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms