RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 NAIF1Q69YI7 327 aaPredicted RBP5.66□□□□□ -1.5
VPS29-210ENST00000552130 OR4A47Q6IF82 309 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 ULK3Q6PHR2 472 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 KCTD18Q6PI47 426 aaPredicted RBP5.66□□□□□ -1.5
VPS29-210ENST00000552130 LRRC74BQ6ZQY2 392 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 PLEKHG7Q6ZR37 379 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 NCCRP1Q6ZVX7 275 aaPredicted RBP5.66□□□□□ -1.5
VPS29-210ENST00000552130 P4HA3Q7Z4N8 544 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 KCNMB4Q86W47 210 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 GSPT2Q8IYD1 628 aaKnown RBP5.66□□□□□ -1.5
VPS29-210ENST00000552130 RBFAQ8N0V3 343 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 LGI2Q8N0V4 545 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 GPC2Q8N158 579 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 CLEC4FQ8N1N0 589 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 PELI3Q8N2H9 469 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 ARHGAP18Q8N392 663 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 PRSS35Q8N3Z0 413 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 Q8N9G6 341 aaPredicted RBP5.66□□□□□ -1.5
VPS29-210ENST00000552130 NUDCD2Q8WVJ2 157 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 DNAAF4Q8WXU2 420 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 MYLPFQ96A32 169 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 FAM131CQ96AQ9 280 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 TMEM18Q96B42 140 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 CPB2Q96IY4 423 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 C3orf30Q96M34 536 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 FCRL5Q96RD9 977 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 P2RY13Q9BPV8 354 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 SYT11Q9BT88 431 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 SDCBP2Q9H190 292 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 METTL8Q9H825 291 aaKnown RBP5.66□□□□□ -1.5
VPS29-210ENST00000552130 RNF121Q9H920 327 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 CLK4Q9HAZ1 481 aaKnown RBP5.66□□□□□ -1.5
VPS29-210ENST00000552130 CHST11Q9NPF2 352 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.66□□□□□ -1.5
VPS29-210ENST00000552130 TREX1Q9NSU2 369 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 MIOSQ9NXC5 875 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 ASIC3Q9UHC3 531 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 UTS2RQ9UKP6 389 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 PADI3Q9ULW8 664 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 POLDIP2Q9Y2S7 368 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 ZNF175Q9Y473 711 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 TIMM10BQ9Y5J6 103 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 PNPLA6Q8IY17 1366 aa5.66□□□□□ -1.5
VPS29-210ENST00000552130 FHOD3Q2V2M9 1422 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 SNED1Q8TER0 1413 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 PLB1Q6P1J6 1458 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 WDR27A2RRH5 827 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 CCT8L1PA6NM43 557 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 GOLGA8JA6NMD2 632 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 MARCH11A6NNE9 402 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 GOLGA8KD6RF30 607 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 H0YIZ8 118 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 TULP2O00295 520 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 OR10H3O60404 316 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 GPR137BO60478 399 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 N4BP1O75113 896 aaKnown RBP5.65□□□□□ -1.5
VPS29-210ENST00000552130 STK17BO94768 372 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 SEMA3DO95025 777 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 OCMP0CE72 109 aaPredicted RBP5.65□□□□□ -1.5
VPS29-210ENST00000552130 ZNF26P17031 533 aaPredicted RBP5.65□□□□□ -1.5
VPS29-210ENST00000552130 SFTPDP35247 375 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 SLC1A2P43004 574 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 TMPRSS3P57727 454 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 OR2B6P58173 313 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 KRTAP10-11P60412 298 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 LCN2P80188 198 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 SRYQ05066 204 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 EFNB3Q15768 340 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 KLHL22Q53GT1 634 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 ZNF691Q5VV52 312 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 ZNF776Q68DI1 518 aaPredicted RBP5.65□□□□□ -1.5
VPS29-210ENST00000552130 VWA1Q6PCB0 445 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 DEF8Q6ZN54 512 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 USP50Q70EL3 339 aaPredicted RBP5.65□□□□□ -1.5
VPS29-210ENST00000552130 AKAP14Q86UN6 197 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 CATSPERDQ86XM0 798 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 CCDC185Q8N715 623 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 POC1AQ8NBT0 407 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 ZNF248Q8NDW4 579 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 ACVR1CQ8NER5 493 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 SLC25A43Q8WUT9 341 aaPredicted RBP5.65□□□□□ -1.5
VPS29-210ENST00000552130 TCP11Q8WWU5 503 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 NAT6Q93015 286 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 CCDC127Q96BQ5 260 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 C8orf44Q96CB5 159 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 MED30Q96HR3 178 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 SERAC1Q96JX3 654 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 CCDC3Q9BQI4 270 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 MCRIP2Q9BUT9 160 aaKnown RBP5.65□□□□□ -1.5
VPS29-210ENST00000552130 DGCR6LQ9BY27 220 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 ASB8Q9H765 288 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 RAVER2Q9HCJ3 691 aaKnown RBP5.65□□□□□ -1.5
VPS29-210ENST00000552130 OR2S2Q9NQN1 319 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 CNGB3Q9NQW8 809 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 SEMA4GQ9NTN9 838 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 ASB6Q9NWX5 421 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 PAQR5Q9NXK6 330 aaPredicted RBP5.65□□□□□ -1.5
VPS29-210ENST00000552130 PLEK2Q9NYT0 353 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 SLC12A6Q9UHW9 1150 aa5.65□□□□□ -1.5
VPS29-210ENST00000552130 OR1A2Q9Y585 309 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms