RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 C2orf15Q8WU43 125 aaKnown RBP13.44□□□□□ -0.26
LIMS1-215ENST00000544547 C12orf57Q99622 126 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 SEC22CQ9BRL7 303 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 ALG8Q9BVK2 526 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 GABARAPL1Q9H0R8 117 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 OR2AG1Q9H205 316 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 ADAP2Q9NPF8 381 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 ERVK-19Q9WJR5 959 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 FOCADQ5VW36 1801 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 LRRTM2O43300 516 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 RBBP9O75884 186 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 ACVR2AP27037 513 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 CD6P30203 668 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 GABRA5P31644 462 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 SLC11A1P49279 550 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 RAB40BQ12829 278 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 GPR17Q13304 367 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 GAB1Q13480 694 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 LRIF1Q5T3J3 769 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 CCDC116Q8IYX3 515 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 GJD3Q8N144 294 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 SLC44A3Q8N4M1 653 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 LINC00471Q8N535 108 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 NANOGP1Q8N7R0 232 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 DOK4Q8TEW6 326 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 S100PBPQ96BU1 408 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 SYNPO2LQ9H987 977 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 CHMP1AQ9HD42 196 aaPredicted RBP13.43□□□□□ -0.26
LIMS1-215ENST00000544547 MYO7AQ13402 2215 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 UCHL1P09936 223 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 CFL1P23528 166 aaKnown RBP13.43□□□□□ -0.26
LIMS1-215ENST00000544547 ACADLP28330 430 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 MAP2K6P52564 334 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 CLDN20P56880 219 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 FGL1Q08830 312 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 LAIR1Q6GTX8 287 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 RBM45Q8IUH3 476 aaKnown RBP13.43□□□□□ -0.26
LIMS1-215ENST00000544547 ZFP82Q8N141 532 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 FBXL6Q8N531 539 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 OR10H5Q8NGA6 315 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 FCRL1Q96LA6 429 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 PITX2Q99697 317 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 TMEM175Q9BSA9 504 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 BHLHE41Q9C0J9 482 aaPredicted RBP13.43□□□□□ -0.26
LIMS1-215ENST00000544547 EMC7Q9NPA0 242 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 TAC3Q9UHF0 121 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 YIPF1Q9Y548 306 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 MEIS3P1A6NDR6 274 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 TRIM64A6NGJ6 449 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 CLDN4O14493 209 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 LALBAP00709 142 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 CD9P21926 228 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 SUOXP51687 545 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 RAB5BP61020 215 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 TPRG1Q6ZUI0 275 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 NRMQ8IXM6 262 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 ZNF676Q8N7Q3 588 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 TMEM163Q8TC26 289 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 QRSL1Q9H0R6 528 aaKnown RBP13.43□□□□□ -0.26
LIMS1-215ENST00000544547 TRAPPC4Q9Y296 219 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 M0QZQ0 153 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 TSPAN6O43657 245 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 HTR2AP28223 471 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 HTR4Q13639 388 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 C2orf27AQ580R0 203 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 LAIR2Q6ISS4 152 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 METAP1DQ6UB28 335 aaPredicted RBP13.43□□□□□ -0.26
LIMS1-215ENST00000544547 PRSS58Q8IYP2 241 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 HDDC3Q8N4P3 179 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 UPRTQ96BW1 309 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 IL17FQ96PD4 163 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 F2RL3Q96RI0 385 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 TRAF4Q9BUZ4 470 aaPredicted RBP13.43□□□□□ -0.26
LIMS1-215ENST00000544547 GABARAPL3Q9BY60 117 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 NOX3Q9HBY0 568 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 ACER3Q9NUN7 267 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 UPB1Q9UBR1 384 aa13.43□□□□□ -0.26
LIMS1-215ENST00000544547 CBR1P16152 277 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 GRPRP30550 384 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 TEKQ02763 1124 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 LDLRAD1Q5T700 205 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 APOOLQ6UXV4 268 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 AMZ2Q86W34 360 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 OR56B4Q8NH76 319 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 C16orf78Q8WTQ4 265 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 SAMD8Q96LT4 415 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 PRR14Q9BWN1 585 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 NEUROD4Q9HD90 331 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 B4GALT6Q9UBX8 382 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 PSMD9O00233 223 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 SDC3O75056 442 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 RAB3AP20336 220 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 CCR7P32248 378 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 SOX9P48436 509 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 ZNF155Q12901 538 aaPredicted RBP13.42□□□□□ -0.26
LIMS1-215ENST00000544547 ABI3BPQ7Z7G0 1075 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 PTOV1Q86YD1 416 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 ZNF304Q9HCX3 659 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 PRMT8Q9NR22 394 aaPredicted RBP13.42□□□□□ -0.26
LIMS1-215ENST00000544547 HCSTQ9UBK5 93 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms