RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 FCGR2AP12318 317 aa11.87□□□□□ -0.51
RTN3-213ENST00000543552 KRT4P19013 534 aa11.87□□□□□ -0.51
RTN3-213ENST00000543552 HK1P19367 917 aa11.87□□□□□ -0.51
RTN3-213ENST00000543552 TCEA1P23193 301 aaKnown RBP11.87□□□□□ -0.51
RTN3-213ENST00000543552 CPOXP36551 454 aa11.87□□□□□ -0.51
RTN3-213ENST00000543552 PCYT1AP49585 367 aa11.87□□□□□ -0.51
RTN3-213ENST00000543552 RPS3AP61247 264 aaKnown RBP11.87□□□□□ -0.51
RTN3-213ENST00000543552 STX5Q13190 355 aa11.87□□□□□ -0.51
RTN3-213ENST00000543552 GLYR1Q49A26 553 aaPredicted RBP11.87□□□□□ -0.51
RTN3-213ENST00000543552 RNF165Q6ZSG1 346 aa11.87□□□□□ -0.51
RTN3-213ENST00000543552 UBQLNLQ8IYU4 475 aa11.87□□□□□ -0.51
RTN3-213ENST00000543552 CEP70Q8NHQ1 597 aa11.87□□□□□ -0.51
RTN3-213ENST00000543552 LINC01560Q8TB33 94 aa11.87□□□□□ -0.51
RTN3-213ENST00000543552 SMPDL3BQ92485 455 aa11.87□□□□□ -0.51
RTN3-213ENST00000543552 GFM2Q969S9 779 aaKnown RBP11.87□□□□□ -0.51
RTN3-213ENST00000543552 TRIM44Q96DX7 344 aaPredicted RBP11.87□□□□□ -0.51
RTN3-213ENST00000543552 ZBED6CLQ96FA7 236 aaPredicted RBP11.87□□□□□ -0.51
RTN3-213ENST00000543552 LMF2Q9BU23 707 aaKnown RBP11.87□□□□□ -0.51
RTN3-213ENST00000543552 G6PC3Q9BUM1 346 aa11.87□□□□□ -0.51
RTN3-213ENST00000543552 TMUB1Q9BVT8 246 aa11.87□□□□□ -0.51
RTN3-213ENST00000543552 LRTM1Q9HBL6 345 aa11.87□□□□□ -0.51
RTN3-213ENST00000543552 EIF3LQ9Y262 564 aaKnown RBP11.87□□□□□ -0.51
RTN3-213ENST00000543552 TMED5Q9Y3A6 229 aa11.87□□□□□ -0.51
RTN3-213ENST00000543552 ZNF175Q9Y473 711 aa11.87□□□□□ -0.51
RTN3-213ENST00000543552 VPS13CQ709C8 3753 aa11.87□□□□□ -0.51
RTN3-213ENST00000543552 MED12Q93074 2177 aa11.86□□□□□ -0.51
RTN3-213ENST00000543552 ZNF469Q96JG9 3925 aaPredicted RBP11.86□□□□□ -0.51
RTN3-213ENST00000543552 A8MXE2 369 aa11.86□□□□□ -0.51
RTN3-213ENST00000543552 AZIN1O14977 448 aa11.86□□□□□ -0.51
RTN3-213ENST00000543552 TNFRSF21O75509 655 aa11.86□□□□□ -0.51
RTN3-213ENST00000543552 SMNDC1O75940 238 aaKnown RBP eCLIP11.86□□□□□ -0.51
RTN3-213ENST00000543552 PRPS2P11908 318 aa11.86□□□□□ -0.51
RTN3-213ENST00000543552 RFX3P48380 749 aa11.86□□□□□ -0.51
RTN3-213ENST00000543552 B3GALT5-AS1P59052 145 aa11.86□□□□□ -0.51
RTN3-213ENST00000543552 OCRLQ01968 901 aa11.86□□□□□ -0.51
RTN3-213ENST00000543552 C17orf67Q0P5P2 114 aa11.86□□□□□ -0.51
RTN3-213ENST00000543552 HSPB3Q12988 150 aa11.86□□□□□ -0.51
RTN3-213ENST00000543552 SH2D5Q6ZV89 423 aa11.86□□□□□ -0.51
RTN3-213ENST00000543552 GSPT2Q8IYD1 628 aaKnown RBP11.86□□□□□ -0.51
RTN3-213ENST00000543552 CNEP1R1Q8N9A8 125 aa11.86□□□□□ -0.51
RTN3-213ENST00000543552 CDRT4Q8N9R6 151 aa11.86□□□□□ -0.51
RTN3-213ENST00000543552 PPCDCQ96CD2 204 aa11.86□□□□□ -0.51
RTN3-213ENST00000543552 C1GALT1C1Q96EU7 318 aa11.86□□□□□ -0.51
RTN3-213ENST00000543552 SLC39A3Q9BRY0 314 aa11.86□□□□□ -0.51
RTN3-213ENST00000543552 LIME1Q9H400 295 aa11.86□□□□□ -0.51
RTN3-213ENST00000543552 REEP4Q9H6H4 257 aa11.86□□□□□ -0.51
RTN3-213ENST00000543552 UQCRHLA0A096LP55 91 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 TBX19O60806 448 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 TNFSF13O75888 250 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 UTS2O95399 124 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 TGM6O95932 706 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 SHBGP04278 402 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 KLK2P20151 261 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 GABRA3P34903 492 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 ASMTP46597 345 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 MANFP55145 182 aaKnown RBP11.85□□□□□ -0.51
RTN3-213ENST00000543552 PRR5P85299 388 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 CLEC6AQ6EIG7 209 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 SZRD1Q7Z422 152 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 R3HCC1LQ7Z5L2 792 aaKnown RBP11.85□□□□□ -0.51
RTN3-213ENST00000543552 GPR151Q8TDV0 419 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 DUSP19Q8WTR2 217 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 MTERF3Q96E29 417 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 MS4A4EQ96PG1 132 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 EML4Q9HC35 981 aaKnown RBP11.85□□□□□ -0.51
RTN3-213ENST00000543552 EQTNQ9NQ60 294 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 ACSS1Q9NUB1 689 aaPredicted RBP11.85□□□□□ -0.51
RTN3-213ENST00000543552 MKS1Q9NXB0 559 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 PAQR5Q9NXK6 330 aaPredicted RBP11.85□□□□□ -0.51
RTN3-213ENST00000543552 ZNF226Q9NYT6 803 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 MED11Q9P086 117 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 CCL27Q9Y4X3 112 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 AP4B1Q9Y6B7 739 aa11.85□□□□□ -0.51
RTN3-213ENST00000543552 NIPBLQ6KC79 2804 aaeCLIP11.84□□□□□ -0.51
RTN3-213ENST00000543552 MPDZO75970 2070 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 A0A087WZY1 265 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 IGLV3-32A0A0A0MS00 114 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 OR2M5A3KFT3 312 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 TMEM114B3SHH9 223 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 H3BML4 177 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 SEC14L5O43304 696 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 TRIM13O60858 407 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 ATE1O95260 518 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 HSPA4LO95757 839 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 ANGPTL1O95841 491 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 HRGP04196 525 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 NGFRP08138 427 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 HPGDP15428 266 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 ZNF17P17021 662 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 MAPK1P28482 360 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 LCN1P31025 176 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 HPCAL1P37235 193 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 RPL3P39023 403 aaKnown RBP11.84□□□□□ -0.51
RTN3-213ENST00000543552 RPL38P63173 70 aaKnown RBP11.84□□□□□ -0.51
RTN3-213ENST00000543552 KIAA0040Q15053 153 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 PRSS53Q2L4Q9 553 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 DEFB113Q30KQ7 82 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 ZCCHC12Q6PEW1 402 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 LRIG3Q6UXM1 1119 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms