RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	PACSIN3	Q9UKS6	424 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	MKLN1	Q9UL63	735 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	ANGPT4	Q9Y264	503 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	CROCC	Q5TZA2	2017 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	ANKRD11	Q6UB99	2663 aa	Predicted RBP	9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	NUP210L	Q5VU65	1888 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	TRAV17	A0A0B4J275	112 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545		A0A0G2JPF8	293 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	PRAMEF27	A3QJZ7	478 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	PRAMEF25	A6NGN4	478 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	HNRNPCL2	B2RXH8	293 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	HNRNPCL3	B7ZW38	293 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	ERVH48-1	M5A8F1	160 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	NME4	O00746	187 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	SCD	O00767	359 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	SCO2	O43819	266 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	HNRNPCL1	O60812	293 aa	Known RBP	9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	ICOSLG	O75144	302 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	SP1	P08047	785 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	CHRM4	P08173	479 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	HNRNPCL4	P0DMR1	293 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	CCL3	P10147	92 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	ARAF	P10398	606 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	BMP2	P12643	396 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	TCN1	P20061	433 aa	Predicted RBP	9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	AQP1	P29972	269 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	LCN1	P31025	176 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	TNFSF10	P50591	281 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	RNF144A	P50876	292 aa	Predicted RBP	9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	EEFSEC	P57772	596 aa	Known RBP	9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	RBBP4	Q09028	425 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	GRAMD1B	Q3KR37	738 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	DNAL1	Q4LDG9	190 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	ZNF766	Q5HY98	468 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	SAMD4B	Q5PRF9	694 aa	Known RBP	9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	PRAMEF20	Q5VT98	475 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	REEP3	Q6NUK4	255 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	C8orf82	Q6P1X6	216 aa	Predicted RBP	9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	ERICH5	Q6P6B1	374 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	IGFL3	Q6UXB1	125 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	LRRC74B	Q6ZQY2	392 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	HMGN2P46	Q86SG4	172 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	ZAR1	Q86SH2	424 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	HPS6	Q86YV9	775 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	ZZZ3	Q8IYH5	903 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	ZNF619	Q8N2I2	560 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	METTL25	Q8N6Q8	603 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	EXD3	Q8N9H8	876 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	TEX19	Q8NA77	164 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	ZNF527	Q8NB42	609 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	GOLM1	Q8NBJ4	401 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	PSD4	Q8NDX1	1056 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	HIPK4	Q8NE63	616 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	SPPL2A	Q8TCT8	520 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	HGD	Q93099	445 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	REXO5	Q96IC2	774 aa	Known RBP	9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	JSRP1	Q96MG2	331 aa	Predicted RBP	9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	ZNF583	Q96ND8	569 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	SIGLEC12	Q96PQ1	595 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	NODAL	Q96S42	347 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	BTBD10	Q9BSF8	475 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	SPATA9	Q9BWV2	254 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	ZNF350	Q9GZX5	532 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	ALG2	Q9H553	416 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	TMEM38A	Q9H6F2	299 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	TRIM45	Q9H8W5	580 aa	Predicted RBP	9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	MTHFD2L	Q9H903	347 aa	Predicted RBP	9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	POLE3	Q9NRF9	147 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	UBQLN4	Q9NRR5	601 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	TAS2R1	Q9NYW7	299 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	FLRT3	Q9NZU0	649 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	CNIH4	Q9P003	139 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	TMEM181	Q9P2C4	612 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	LHX6	Q9UPM6	363 aa		9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	9.33	□□□□□ -0.92
CPSF7-221	ENST00000543545	ELOVL7	A1L3X0	281 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	C2orf72	A6NCS6	295 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	FAM220BP	B1ANY3	271 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545		H3BNH8	94 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	GTPBP1	O00178	669 aa	Known RBP	9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	DNAJA2	O60884	412 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	NEURL1	O76050	574 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	PGM3	O95394	542 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	CNR1	P21554	472 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	EVI2B	P34910	448 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	PCGF2	P35227	344 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	CPOX	P36551	454 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	DCT	P40126	519 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	CASP3	P42574	277 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	MASP1	P48740	699 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	CD97	P48960	835 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	GSK3B	P49841	420 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	GZMM	P51124	257 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	ATP12A	P54707	1039 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	GPR85	P60893	370 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	KCNJ2	P63252	427 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	FUT5	Q11128	374 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	LY6D	Q14210	128 aa		9.32	□□□□□ -0.92
CPSF7-221	ENST00000543545	ZNF169	Q14929	603 aa	Predicted RBP	9.32	□□□□□ -0.92

Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms