RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 IGLV3-32A0A0A0MS00 114 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 C15orf38-AP3S2A0A0A6YYH1 394 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 A0A0G2JNJ9 132 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 KDM4EB2RXH2 506 aaPredicted RBP12.9□□□□□ -0.34
USP28-209ENST00000540925 SDHDO14521 159 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 HNRNPRO43390 633 aaKnown RBP12.9□□□□□ -0.34
USP28-209ENST00000540925 ZIC3O60481 467 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 TOXO94900 526 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 NGFRP08138 427 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 PRF1P14222 555 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 IGFBP2P18065 325 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 SRD5A2P31213 254 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 KIR3DL1P43629 444 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 VPS26BQ4G0F5 336 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 ACSF3Q4G176 576 aaPredicted RBP12.9□□□□□ -0.34
USP28-209ENST00000540925 AGBL2Q5U5Z8 902 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 ADGRE4PQ86SQ3 457 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 YRDCQ86U90 279 aaKnown RBP12.9□□□□□ -0.34
USP28-209ENST00000540925 CCDC71Q8IV32 467 aaPredicted RBP12.9□□□□□ -0.34
USP28-209ENST00000540925 OR8J2Q8NGG1 315 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 SFXN5Q8TD22 340 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 ASB5Q8WWX0 329 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 ARL8AQ96BM9 186 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 PPP1R36Q96LQ0 422 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 PAIP2Q9BPZ3 127 aaKnown RBP12.9□□□□□ -0.34
USP28-209ENST00000540925 DUSP26Q9BV47 211 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 ENKD1Q9H0I2 346 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 DUSP22Q9NRW4 184 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 COQ3Q9NZJ6 369 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 Q9UFV3 132 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 ARHGAP21Q5T5U3 1957 aa12.9□□□□□ -0.34
USP28-209ENST00000540925 PKDREJQ9NTG1 2253 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 AHRRA9YTQ3 701 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 KLF11O14901 512 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 KCNK2O95069 426 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 UTS2O95399 124 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 C6orf47O95873 294 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 EPPINO95925 133 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 ACTL6AO96019 429 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 HMGN2P05204 90 aaKnown RBP12.89□□□□□ -0.35
USP28-209ENST00000540925 ALDOCP09972 364 aaKnown RBP12.89□□□□□ -0.35
USP28-209ENST00000540925 CPN1P15169 458 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 CEACAM8P31997 349 aaPredicted RBP12.89□□□□□ -0.35
USP28-209ENST00000540925 PRKAG1P54619 331 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 PSMD4P55036 377 aaKnown RBP12.89□□□□□ -0.35
USP28-209ENST00000540925 B3GALT5-AS1P59052 145 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 HBA1P69905 142 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 PHC1P78364 1004 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 PRR5P85299 388 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 GRAMD1BQ3KR37 738 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 RIPPLY2Q5TAB7 128 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 ZAR1Q86SH2 424 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 PM20D2Q8IYS1 436 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 OR2M3Q8NG83 312 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 MGARPQ8TDB4 240 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 GPR151Q8TDV0 419 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 CA5BP1Q8WTZ4 195 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 ABTB1Q969K4 478 aaPredicted RBP12.89□□□□□ -0.35
USP28-209ENST00000540925 MARVELD3Q96A59 401 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 TESCQ96BS2 214 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 RMND5BQ96G75 393 aaPredicted RBP12.89□□□□□ -0.35
USP28-209ENST00000540925 STACQ99469 402 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 PRPF18Q99633 342 aaKnown RBP12.89□□□□□ -0.35
USP28-209ENST00000540925 NEUROD4Q9HD90 331 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 NPDC1Q9NQX5 325 aaPredicted RBP12.89□□□□□ -0.35
USP28-209ENST00000540925 ZCCHC3Q9NUD5 404 aaKnown RBP12.89□□□□□ -0.35
USP28-209ENST00000540925 FBXO34Q9NWN3 711 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 MRTO4Q9UKD2 239 aaKnown RBP12.89□□□□□ -0.35
USP28-209ENST00000540925 KIAA1549Q9HCM3 1950 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 PDZD2O15018 2839 aa12.89□□□□□ -0.35
USP28-209ENST00000540925 NUP214P35658 2090 aaPredicted RBP12.89□□□□□ -0.35
USP28-209ENST00000540925 HCFC1P51610 2035 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 ALG1L2C9J202 215 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 RNASET2O00584 256 aaKnown RBP12.88□□□□□ -0.35
USP28-209ENST00000540925 ZNF195O14628 629 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 HDAC3O15379 428 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 KCNH1O95259 989 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 H2AFXP16104 143 aaPredicted RBP12.88□□□□□ -0.35
USP28-209ENST00000540925 LBPP18428 481 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 LCN1P31025 176 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 CCT3P49368 545 aaKnown RBP12.88□□□□□ -0.35
USP28-209ENST00000540925 LHX2P50458 406 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 LSM12Q3MHD2 195 aaKnown RBP12.88□□□□□ -0.35
USP28-209ENST00000540925 NSUN5P2Q63ZY6 315 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 OR5M10Q6IEU7 315 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 CDC73Q6P1J9 531 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 POMZP3Q6PJE2 187 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 LIX1LQ8IVB5 337 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 OR56A1Q8NGH5 318 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 OR4C3Q8NH37 302 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 FBXO30Q8TB52 745 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 ZPLD1Q8TCW7 415 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 SLC9A6Q92581 669 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 MAELQ96JY0 434 aaKnown RBP12.88□□□□□ -0.35
USP28-209ENST00000540925 SH3GL2Q99962 352 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 SPOCK3Q9BQ16 436 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 G6PC3Q9BUM1 346 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 BTBD2Q9BX70 525 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 PIGUQ9H490 435 aa12.88□□□□□ -0.35
USP28-209ENST00000540925 MANSC1Q9H8J5 431 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms