RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 CHI3L2Q15782 390 aa10.5□□□□□ -0.73
RTN3-209ENST00000538995 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.5□□□□□ -0.73
RTN3-209ENST00000538995 EXOSC6Q5RKV6 272 aaKnown RBP10.5□□□□□ -0.73
RTN3-209ENST00000538995 MFSD12Q6NUT3 480 aa10.5□□□□□ -0.73
RTN3-209ENST00000538995 LRRC34Q8IZ02 419 aa10.5□□□□□ -0.73
RTN3-209ENST00000538995 NUP43Q8NFH3 380 aa10.5□□□□□ -0.73
RTN3-209ENST00000538995 PSMA8Q8TAA3 256 aa10.5□□□□□ -0.73
RTN3-209ENST00000538995 GPR151Q8TDV0 419 aa10.5□□□□□ -0.73
RTN3-209ENST00000538995 TUBGCP3Q96CW5 907 aa10.5□□□□□ -0.73
RTN3-209ENST00000538995 LRRC46Q96FV0 321 aa10.5□□□□□ -0.73
RTN3-209ENST00000538995 SFXN2Q96NB2 322 aa10.5□□□□□ -0.73
RTN3-209ENST00000538995 ZFP3Q96NJ6 502 aa10.5□□□□□ -0.73
RTN3-209ENST00000538995 UCN2Q96RP3 112 aa10.5□□□□□ -0.73
RTN3-209ENST00000538995 PRPF18Q99633 342 aaKnown RBP10.5□□□□□ -0.73
RTN3-209ENST00000538995 NEUROD4Q9HD90 331 aa10.5□□□□□ -0.73
RTN3-209ENST00000538995 EQTNQ9NQ60 294 aa10.5□□□□□ -0.73
RTN3-209ENST00000538995 KCNN3Q9UGI6 736 aa10.5□□□□□ -0.73
RTN3-209ENST00000538995 HAO1Q9UJM8 370 aa10.5□□□□□ -0.73
RTN3-209ENST00000538995 EIF3LQ9Y262 564 aaKnown RBP10.5□□□□□ -0.73
RTN3-209ENST00000538995 NCKAP5O14513 1909 aa10.5□□□□□ -0.73
RTN3-209ENST00000538995 IGLV3-32A0A0A0MS00 114 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 A0A1W2PRB8 838 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 H0Y3Z8 333 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 LINC01387J3KSC0 135 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 SCO2O43819 266 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 SOX30O94993 753 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 UTS2O95399 124 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 IL18BPO95998 194 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 CAPN3P20807 821 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 PRIM2P49643 509 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 LHX2P50458 406 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 ASCL1P50553 236 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 EMX2Q04743 252 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 BCL2A1Q16548 175 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 FBXL19-AS1Q494R0 122 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 CPTPQ5TA50 214 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 IL23RQ5VWK5 629 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 CES4AQ5XG92 561 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 SZRD1Q7Z422 152 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 WDR53Q7Z5U6 358 aaPredicted RBP10.49□□□□□ -0.73
RTN3-209ENST00000538995 CAMKMTQ7Z624 323 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 ADGRE4PQ86SQ3 457 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 LIX1LQ8IVB5 337 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 TRIM42Q8IWZ5 723 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 RIMKLAQ8IXN7 391 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 NAXEQ8NCW5 288 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 TNIP2Q8NFZ5 429 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 OR2M3Q8NG83 312 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 OR7A2PQ8NGA2 310 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 OR56A1Q8NGH5 318 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 GOT1L1Q8NHS2 421 aaPredicted RBP10.49□□□□□ -0.73
RTN3-209ENST00000538995 OR5P2Q8WZ92 322 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 COQ8BQ96D53 544 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 FAM120BQ96EK7 910 aaKnown RBP10.49□□□□□ -0.73
RTN3-209ENST00000538995 RMND5BQ96G75 393 aaPredicted RBP10.49□□□□□ -0.73
RTN3-209ENST00000538995 LURAP1Q96LR2 239 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 TRIB1Q96RU8 372 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 STACQ99469 402 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 C1orf50Q9BV19 199 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 TBL1XR1Q9BZK7 514 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 BHLHE41Q9C0J9 482 aaPredicted RBP10.49□□□□□ -0.73
RTN3-209ENST00000538995 CENPHQ9H3R5 247 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 PTGES2Q9H7Z7 377 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 MCCC2Q9HCC0 563 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 DUSP22Q9NRW4 184 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 SIRT3Q9NTG7 399 aaPredicted RBP10.49□□□□□ -0.73
RTN3-209ENST00000538995 ZCCHC3Q9NUD5 404 aaKnown RBP10.49□□□□□ -0.73
RTN3-209ENST00000538995 GIN1Q9NXP7 522 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 NOP53Q9NZM5 478 aaKnown RBP10.49□□□□□ -0.73
RTN3-209ENST00000538995 GIMAP2Q9UG22 337 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 FOXD3Q9UJU5 478 aaPredicted RBP10.49□□□□□ -0.73
RTN3-209ENST00000538995 RAP2CQ9Y3L5 183 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 OTOGQ6ZRI0 2925 aa10.49□□□□□ -0.73
RTN3-209ENST00000538995 POLQO75417 2590 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 GXYLT2A0PJZ3 443 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 B4DXG7 233 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 ALG1L2C9J202 215 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 ITM2AO43736 263 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 ZIC3O60481 467 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 ERLIN1O75477 346 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 KRT16P08779 473 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 ALOX5P09917 674 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 ACP2P11117 423 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 LAMP1P11279 417 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 ZNF708P17019 499 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 BMP5P22003 454 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 CTSSP25774 331 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 OPRM1P35372 400 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 RFX3P48380 749 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 SLC1A6P48664 564 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 ZNF136P52737 540 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 PRKAG1P54619 331 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 CLDN18P56856 261 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 B3GALT5-AS1P59052 145 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 TLE4Q04727 773 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 C17orf67Q0P5P2 114 aa10.48□□□□□ -0.73
RTN3-209ENST00000538995 PDCD2Q16342 344 aaPredicted RBP10.48□□□□□ -0.73
RTN3-209ENST00000538995 LSM12Q3MHD2 195 aaKnown RBP10.48□□□□□ -0.73
RTN3-209ENST00000538995 GLYR1Q49A26 553 aaPredicted RBP10.48□□□□□ -0.73
RTN3-209ENST00000538995 OR5M10Q6IEU7 315 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms