RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 C21orf58P58505 322 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 BST1Q10588 318 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 MAD2L1Q13257 205 aaPredicted RBP13.44□□□□□ -0.26
USP28-204ENST00000537642 DUSP5Q16690 384 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 SMU1Q2TAY7 513 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 VPS26BQ4G0F5 336 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 EXOSC6Q5RKV6 272 aaKnown RBP13.44□□□□□ -0.26
USP28-204ENST00000537642 FADS6Q8N9I5 356 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 SLC16A11Q8NCK7 471 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 OR2M3Q8NG83 312 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 GPR151Q8TDV0 419 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 OR5P2Q8WZ92 322 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 SLC9A6Q92581 669 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 TLCD1Q96CP7 247 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 SPOCK3Q9BQ16 436 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 TRIM8Q9BZR9 551 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 DSN1Q9H410 356 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 RUBCNLQ9H714 662 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 TMBIM4Q9HC24 238 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 KCNJ16Q9NPI9 418 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 ATAD3AQ9NVI7 634 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 PNPOQ9NVS9 261 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 FAM120CQ9NX05 1096 aaKnown RBP13.44□□□□□ -0.26
USP28-204ENST00000537642 TAS2R10Q9NYW0 307 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 NOP53Q9NZM5 478 aaKnown RBP13.44□□□□□ -0.26
USP28-204ENST00000537642 PPP4R1LQ9P1A2 415 aa13.44□□□□□ -0.26
USP28-204ENST00000537642 MRPS18CQ9Y3D5 142 aaKnown RBP13.44□□□□□ -0.26
USP28-204ENST00000537642 FAM47E-STBD1D6RA91 191 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 ZIC3O60481 467 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 UTS2O95399 124 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 C6orf47O95873 294 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 DPP4P27487 766 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 DIO3P55073 304 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 GFRA1P56159 465 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 CLDN8P56748 225 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 MAGOHP61326 146 aaKnown RBP13.43□□□□□ -0.26
USP28-204ENST00000537642 PRR5P85299 388 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 STX5Q13190 355 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 GRAMD1BQ3KR37 738 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 ZCCHC12Q6PEW1 402 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 APOOLQ6UXV4 268 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 GALNT10Q86SR1 603 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 MARCH3Q86UD3 253 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 IFNEQ86WN2 208 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 TRIM42Q8IWZ5 723 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 ZNF295-AS1Q8N0V1 137 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 NATD1Q8N6N6 113 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 TNIP2Q8NFZ5 429 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 OR4K17Q8NGC6 315 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 PSMA8Q8TAA3 256 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 FAM110BQ8TC76 370 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 MGARPQ8TDB4 240 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 OTUB1Q96FW1 271 aaPredicted RBP13.43□□□□□ -0.26
USP28-204ENST00000537642 PRPF18Q99633 342 aaKnown RBP13.43□□□□□ -0.26
USP28-204ENST00000537642 TREX2Q9BQ50 279 aaPredicted RBP13.43□□□□□ -0.26
USP28-204ENST00000537642 YIPF4Q9BSR8 244 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 DUSP26Q9BV47 211 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 NUF2Q9BZD4 464 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 BHLHE41Q9C0J9 482 aaPredicted RBP13.43□□□□□ -0.26
USP28-204ENST00000537642 CXorf36Q9H7Y0 433 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 ZCCHC3Q9NUD5 404 aaKnown RBP13.43□□□□□ -0.26
USP28-204ENST00000537642 DKKL1Q9UK85 242 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 SNX8Q9Y5X2 465 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 CSMD1Q96PZ7 3565 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 FBN2P35556 2912 aa13.43□□□□□ -0.26
USP28-204ENST00000537642 KCNK2O95069 426 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 HMGN2P05204 90 aaKnown RBP13.42□□□□□ -0.26
USP28-204ENST00000537642 ALOX5P09917 674 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 CPN1P15169 458 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 IGFBP2P18065 325 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 TCEA1P23193 301 aaKnown RBP13.42□□□□□ -0.26
USP28-204ENST00000537642 MSX1P28360 303 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 CEACAM8P31997 349 aaPredicted RBP13.42□□□□□ -0.26
USP28-204ENST00000537642 GCKP35557 465 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 TIMP3P35625 211 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 PRIM2P49643 509 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 STARP49675 285 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 SLC18A1P54219 525 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 B3GALT5-AS1P59052 145 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 LASP1Q14847 261 aaKnown RBP13.42□□□□□ -0.26
USP28-204ENST00000537642 LSM12Q3MHD2 195 aaKnown RBP13.42□□□□□ -0.26
USP28-204ENST00000537642 NSUN5P2Q63ZY6 315 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 FIGNL1Q6PIW4 674 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 MEX3BQ6ZN04 569 aaKnown RBP13.42□□□□□ -0.26
USP28-204ENST00000537642 GDF7Q7Z4P5 450 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 CAMKMTQ7Z624 323 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 ZAR1Q86SH2 424 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 LACC1Q8IV20 430 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 KIRREL3Q8IZU9 778 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 NAXEQ8NCW5 288 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 DUSP19Q8WTR2 217 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 DTNBP1Q96EV8 351 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 TRIB1Q96RU8 372 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 MEAF6Q9HAF1 191 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 SDHAF3Q9NRP4 125 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 FBXO34Q9NWN3 711 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 MED11Q9P086 117 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 RPH3AQ9Y2J0 694 aaPredicted RBP13.42□□□□□ -0.26
USP28-204ENST00000537642 APCP25054 2843 aa13.42□□□□□ -0.26
USP28-204ENST00000537642 DCHS2Q6V1P9 2916 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms