RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 TRDV1A0A1B0GX56 115 aa19.83■□□□□ 0.77
VPS28-205ENST00000526204 CLEC2LP0C7M8 214 aa19.83■□□□□ 0.77
VPS28-205ENST00000526204 GAAP10253 952 aa19.83■□□□□ 0.77
VPS28-205ENST00000526204 HOXC5Q00444 222 aa19.83■□□□□ 0.77
VPS28-205ENST00000526204 ACSM1Q08AH1 577 aa19.83■□□□□ 0.77
VPS28-205ENST00000526204 TYW3Q6IPR3 259 aaKnown RBP19.83■□□□□ 0.77
VPS28-205ENST00000526204 C11orf74Q86VG3 221 aa19.83■□□□□ 0.77
VPS28-205ENST00000526204 OR2T33Q8NG76 320 aa19.83■□□□□ 0.77
VPS28-205ENST00000526204 TM4SF19Q96DZ7 209 aa19.83■□□□□ 0.77
VPS28-205ENST00000526204 FCRL4Q96PJ5 515 aa19.83■□□□□ 0.77
VPS28-205ENST00000526204 CDCA3Q99618 268 aaPredicted RBP19.83■□□□□ 0.77
VPS28-205ENST00000526204 TM9SF2Q99805 663 aa19.83■□□□□ 0.77
VPS28-205ENST00000526204 C6orf106Q9H6K1 298 aaPredicted RBP19.83■□□□□ 0.77
VPS28-205ENST00000526204 TIGARQ9NQ88 270 aa19.83■□□□□ 0.77
VPS28-205ENST00000526204 TOR4AQ9NXH8 423 aa19.83■□□□□ 0.77
VPS28-205ENST00000526204 PCOLCE2Q9UKZ9 415 aa19.83■□□□□ 0.77
VPS28-205ENST00000526204 CDH10Q9Y6N8 788 aa19.83■□□□□ 0.77
VPS28-205ENST00000526204 AKAP8O43823 692 aaKnown RBP19.82■□□□□ 0.76
VPS28-205ENST00000526204 KRT8P05787 483 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 THBS1P07996 1170 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 NDUFV2P19404 249 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 ZNF10P21506 573 aaPredicted RBP19.82■□□□□ 0.76
VPS28-205ENST00000526204 HTR1FP30939 366 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 HTR3AP46098 478 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 LBX1P52954 281 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 FABP5Q01469 135 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 DUSP8Q13202 625 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 ASAH1Q13510 395 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 PDZK1Q5T2W1 519 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 NXNL2Q5VZ03 156 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 FBXO42Q6P3S6 717 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 ZNF517Q6ZMY9 492 aaPredicted RBP19.82■□□□□ 0.76
VPS28-205ENST00000526204 RAB43Q86YS6 212 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 PSD4Q8NDX1 1056 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 GABRG3Q99928 467 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 H2AFY2Q9P0M6 372 aaPredicted RBP19.82■□□□□ 0.76
VPS28-205ENST00000526204 CLCA2Q9UQC9 943 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 YARS2Q9Y2Z4 477 aaKnown RBP19.82■□□□□ 0.76
VPS28-205ENST00000526204 A0A1W2PQ09 198 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 B3GALT2O43825 422 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 CH25HO95992 272 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 THY1P04216 161 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 SMIM10L1P0DMW3 83 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 AZGP1P25311 298 aaKnown RBP19.82■□□□□ 0.76
VPS28-205ENST00000526204 GPR4P46093 362 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 RFX2P48378 723 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 PRR23CQ6ZRP0 262 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 USP53Q70EK8 1073 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 SHFQ7M4L6 423 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 LHFPL3Q86UP9 236 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 KLHL36Q8N4N3 616 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 OR52N1Q8NH53 320 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 TMEM255BQ8WV15 326 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 SMIM10Q96HG1 83 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 RIPOR3Q96MK2 946 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 CERS4Q9HA82 394 aa19.82■□□□□ 0.76
VPS28-205ENST00000526204 POM121BA6NF01 834 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 SEC14L5O43304 696 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 TNFSF14O43557 240 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 NTN1O95631 604 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 EML2O95834 649 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 IGHA1P01876 353 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 RSBN1Q5VWQ0 802 aaPredicted RBP19.81■□□□□ 0.76
VPS28-205ENST00000526204 ENPP7Q6UWV6 458 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 RANBP3LQ86VV4 465 aaPredicted RBP19.81■□□□□ 0.76
VPS28-205ENST00000526204 DNAJC5GQ8N7S2 189 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 OR1E3Q8WZA6 343 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 OR2A5Q96R48 311 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 JAM3Q9BX67 310 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 SLC22A4Q9H015 551 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 ZNF624Q9P2J8 865 aaPredicted RBP19.81■□□□□ 0.76
VPS28-205ENST00000526204 SLC7A7Q9UM01 511 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 SCML1Q9UN30 329 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 NTNG1Q9Y2I2 539 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 CHD9Q3L8U1 2897 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 TMCC2O75069 709 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 HLA-DPB1P04440 258 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 MAGEA10P43363 369 aaPredicted RBP19.81■□□□□ 0.76
VPS28-205ENST00000526204 BCL2A1Q16548 175 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 ZNF628Q5EBL2 1059 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 TMEM196Q5HYL7 178 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 FAM109BQ6ICB4 259 aaPredicted RBP19.81■□□□□ 0.76
VPS28-205ENST00000526204 PARM1Q6UWI2 310 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 ZNF836Q6ZNA1 936 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 MYADMQ96S97 322 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 SLC6A17Q9H1V8 727 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 IGFLR1Q9H665 355 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 DAPP1Q9UN19 280 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 DOCK9Q9BZ29 2069 aa19.81■□□□□ 0.76
VPS28-205ENST00000526204 AK4P27144 223 aaPredicted RBP19.8■□□□□ 0.76
VPS28-205ENST00000526204 PPP3R1P63098 170 aa19.8■□□□□ 0.76
VPS28-205ENST00000526204 EEF1A1P68104 462 aaKnown RBP19.8■□□□□ 0.76
VPS28-205ENST00000526204 NFATC4Q14934 902 aa19.8■□□□□ 0.76
VPS28-205ENST00000526204 DUSP5Q16690 384 aa19.8■□□□□ 0.76
VPS28-205ENST00000526204 DEFB134Q4QY38 66 aa19.8■□□□□ 0.76
VPS28-205ENST00000526204 C7orf61Q8IZ16 206 aa19.8■□□□□ 0.76
VPS28-205ENST00000526204 OR4F15Q8NGB8 312 aa19.8■□□□□ 0.76
VPS28-205ENST00000526204 NEDD4LQ96PU5 975 aa19.8■□□□□ 0.76
VPS28-205ENST00000526204 SDF2Q99470 211 aa19.8■□□□□ 0.76
VPS28-205ENST00000526204 PIGUQ9H490 435 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms