RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 TMBIM4Q9HC24 238 aa10.45□□□□□ -0.74
VCAN-212ENST00000515397 CHST11Q9NPF2 352 aa10.45□□□□□ -0.74
VCAN-212ENST00000515397 ACSS1Q9NUB1 689 aaPredicted RBP10.45□□□□□ -0.74
VCAN-212ENST00000515397 ZCCHC3Q9NUD5 404 aaKnown RBP10.45□□□□□ -0.74
VCAN-212ENST00000515397 EIF3LQ9Y262 564 aaKnown RBP10.45□□□□□ -0.74
VCAN-212ENST00000515397 ACTL7BQ9Y614 415 aa10.45□□□□□ -0.74
VCAN-212ENST00000515397 KCNE3Q9Y6H6 103 aa10.45□□□□□ -0.74
VCAN-212ENST00000515397 PCNX3Q9H6A9 2034 aa10.45□□□□□ -0.74
VCAN-212ENST00000515397 NPIPA5A0A0B4J1W7 369 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 GOLGA8QA0A0J9YX86 632 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 GOLGA8OA6NCC3 632 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 NPIPA7E9PJI5 369 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 GOLGA8NF8WBI6 632 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 CFLARO15519 480 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 NKX2-2O95096 273 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 IL33O95760 270 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 HMGN2P05204 90 aaKnown RBP10.44□□□□□ -0.74
VCAN-212ENST00000515397 NPIPA8P0DM63 369 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 ELAVL4P26378 380 aaKnown RBP10.44□□□□□ -0.74
VCAN-212ENST00000515397 DPP4P27487 766 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 MAP3K8P41279 467 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 CCT3P49368 545 aaKnown RBP10.44□□□□□ -0.74
VCAN-212ENST00000515397 TP53BP2Q13625 1128 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 CASP8Q14790 479 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 SPDYE7PQ495Y7 208 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 ACSF3Q4G176 576 aaPredicted RBP10.44□□□□□ -0.74
VCAN-212ENST00000515397 OR4F3Q6IEY1 312 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 MFSD12Q6NUT3 480 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 TMEM81Q6P7N7 255 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 MEX3BQ6ZN04 569 aaKnown RBP10.44□□□□□ -0.74
VCAN-212ENST00000515397 OLIG3Q7RTU3 272 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 ANKRD46Q86W74 232 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 CLECL1Q8IZS7 167 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 ZNF295-AS1Q8N0V1 137 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 NAXEQ8NCW5 288 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 CEP70Q8NHQ1 597 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 ASB5Q8WWX0 329 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 OR5P2Q8WZ92 322 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 TLCD1Q96CP7 247 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 COQ8BQ96D53 544 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 MTERF3Q96E29 417 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 DUSP26Q9BV47 211 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 WDR55Q9H6Y2 383 aaPredicted RBP10.44□□□□□ -0.74
VCAN-212ENST00000515397 KCNJ16Q9NPI9 418 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 NPDC1Q9NQX5 325 aaPredicted RBP10.44□□□□□ -0.74
VCAN-212ENST00000515397 GIN1Q9NXP7 522 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 PPP4R1LQ9P1A2 415 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 DKKL1Q9UK85 242 aa10.44□□□□□ -0.74
VCAN-212ENST00000515397 APCP25054 2843 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 KIAA1549Q9HCM3 1950 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 ADGRG4Q8IZF6 3080 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 H0YC42 278 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 SLITRK5O94991 958 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 KCNK2O95069 426 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 KCNH1O95259 989 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 CPSF4O95639 269 aaKnown RBP10.43□□□□□ -0.74
VCAN-212ENST00000515397 C1QCP02747 245 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 OPN1LWP04000 364 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 ALOX5P09917 674 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 GABRA1P14867 456 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 HK1P19367 917 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 PRPS1L1P21108 318 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 EPHA3P29320 983 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 SOAT1P35610 550 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 ZFP36L2P47974 494 aaKnown RBP10.43□□□□□ -0.74
VCAN-212ENST00000515397 TPD52P55327 224 aaPredicted RBP10.43□□□□□ -0.74
VCAN-212ENST00000515397 CLDN8P56748 225 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 RPS26P62854 115 aaKnown RBP10.43□□□□□ -0.74
VCAN-212ENST00000515397 HBA1P69905 142 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 PHC1P78364 1004 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 TFF3Q07654 80 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 CROCCP2Q86T23 111 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 UBQLNLQ8IYU4 475 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 CDRT4Q8N9R6 151 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 OR2M3Q8NG83 312 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 RNF138Q8WVD3 245 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 CDS1Q92903 461 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 ZNF764Q96H86 408 aaPredicted RBP10.43□□□□□ -0.74
VCAN-212ENST00000515397 TEX37Q96LM6 180 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 SFXN2Q96NB2 322 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 MS4A4EQ96PG1 132 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 TUBA1CQ9BQE3 449 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 OR2B2Q9GZK3 357 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 RYDENQ9NUL5 291 aaKnown RBP10.43□□□□□ -0.74
VCAN-212ENST00000515397 NOP53Q9NZM5 478 aaKnown RBP10.43□□□□□ -0.74
VCAN-212ENST00000515397 NTMQ9P121 344 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.43□□□□□ -0.74
VCAN-212ENST00000515397 DCHS2Q6V1P9 2916 aa10.43□□□□□ -0.74
VCAN-212ENST00000515397 FBN2P35556 2912 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 SPG11Q96JI7 2443 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 PHF3Q92576 2039 aaKnown RBP10.42□□□□□ -0.74
VCAN-212ENST00000515397 AHRRA9YTQ3 701 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 SDHDO14521 159 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 ANGPTL1O95841 491 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 EPPINO95925 133 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 ALDOCP09972 364 aaKnown RBP10.42□□□□□ -0.74
VCAN-212ENST00000515397 BMP5P22003 454 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 SRD5A2P31213 254 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 GFRA1P56159 465 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 B3GALT5-AS1P59052 145 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms