RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 FAM181AQ8N9Y4 354 aa9.21□□□□□ -0.94
CLIP1-204ENST00000501271 BBS1Q8NFJ9 593 aa9.21□□□□□ -0.94
CLIP1-204ENST00000501271 FLVCR1-AS1Q8TAF5 88 aa9.21□□□□□ -0.94
CLIP1-204ENST00000501271 SETD6Q8TBK2 473 aa9.21□□□□□ -0.94
CLIP1-204ENST00000501271 DOK4Q8TEW6 326 aa9.21□□□□□ -0.94
CLIP1-204ENST00000501271 UFD1Q92890 307 aa9.21□□□□□ -0.94
CLIP1-204ENST00000501271 C1GALT1C1Q96EU7 318 aa9.21□□□□□ -0.94
CLIP1-204ENST00000501271 SLC41A3Q96GZ6 507 aa9.21□□□□□ -0.94
CLIP1-204ENST00000501271 KCTD7Q96MP8 289 aa9.21□□□□□ -0.94
CLIP1-204ENST00000501271 AGAP4Q96P64 663 aa9.21□□□□□ -0.94
CLIP1-204ENST00000501271 DCLRE1CQ96SD1 692 aaKnown RBP9.21□□□□□ -0.94
CLIP1-204ENST00000501271 ARHGAP9Q9BRR9 750 aa9.21□□□□□ -0.94
CLIP1-204ENST00000501271 HOXD1Q9GZZ0 328 aa9.21□□□□□ -0.94
CLIP1-204ENST00000501271 TMEM165Q9HC07 324 aa9.21□□□□□ -0.94
CLIP1-204ENST00000501271 CD93Q9NPY3 652 aa9.21□□□□□ -0.94
CLIP1-204ENST00000501271 KLHL28Q9NXS3 571 aa9.21□□□□□ -0.94
CLIP1-204ENST00000501271 KCMF1Q9P0J7 381 aa9.21□□□□□ -0.94
CLIP1-204ENST00000501271 YBX2Q9Y2T7 364 aaKnown RBP9.21□□□□□ -0.94
CLIP1-204ENST00000501271 RBMX2Q9Y388 322 aaKnown RBP9.21□□□□□ -0.94
CLIP1-204ENST00000501271 EXOSC1Q9Y3B2 195 aaKnown RBP9.21□□□□□ -0.94
CLIP1-204ENST00000501271 CDC42EP2O14613 210 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 LINC01565O15544 149 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 CTSVO60911 334 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 SLC2A10O95528 541 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 CPN2P22792 545 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 SLC1A3P43003 542 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 SLC9A3P48764 834 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 CAV3P56539 151 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 RGS1Q08116 209 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 TAB1Q15750 504 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 DUSP5Q16690 384 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 DEFB134Q4QY38 66 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 C9orf50Q5SZB4 431 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 CCNJQ5T5M9 372 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 AADACL4Q5VUY2 407 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 FBXO42Q6P3S6 717 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 ENPP7Q6UWV6 458 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 FAM131AQ6UXB0 335 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 ZNF620Q6ZNG0 422 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 NT5CQ8TCD5 201 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 KATNB1Q9BVA0 655 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 TMEM106CQ9BVX2 250 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 MCOLN1Q9GZU1 580 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 MTIF3Q9H2K0 278 aaKnown RBP9.2□□□□□ -0.94
CLIP1-204ENST00000501271 SRMSQ9H3Y6 488 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 IL20Q9NYY1 176 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 NTMQ9P121 344 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 SLC7A7Q9UM01 511 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 LINC00854A0A1B0GVQ3 168 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 A0A1W2PQF6 199 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 HTR3EA5X5Y0 456 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 SLC30A4O14863 429 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 SLC35G6P0C7Q6 338 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 EN2P19622 333 aaPredicted RBP9.2□□□□□ -0.94
CLIP1-204ENST00000501271 GABRA5P31644 462 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 PBX2P40425 430 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 STAT5AP42229 794 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 NR4A2P43354 598 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 OR2B6P58173 313 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 ID2Q02363 134 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 MADCAM1Q13477 382 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 GPR50Q13585 617 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 RUNX2Q13950 521 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 PGGHGQ32M88 737 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 ARMC4Q5T2S8 1044 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 SYCE2Q6PIF2 218 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 MBOAT2Q6ZWT7 520 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 GALNT12Q8IXK2 581 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 OR2L13Q8N349 312 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 GALNT6Q8NCL4 622 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 OSTF1Q92882 214 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 TSACCQ96A04 125 aaPredicted RBP9.2□□□□□ -0.94
CLIP1-204ENST00000501271 OR2A5Q96R48 311 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 ZNF649Q9BS31 505 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 MED18Q9BUE0 208 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 PRRG3Q9BZD7 231 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 ISYNA1Q9NPH2 558 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 DZANK1Q9NVP4 752 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 WDR45Q9Y484 360 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 PCDHGB2Q9Y5G2 931 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 CSNK1G3Q9Y6M4 447 aa9.2□□□□□ -0.94
CLIP1-204ENST00000501271 ZNF860A6NHJ4 632 aa9.19□□□□□ -0.94
CLIP1-204ENST00000501271 DUXAA6NLW8 204 aa9.19□□□□□ -0.94
CLIP1-204ENST00000501271 OR5F1O95221 314 aa9.19□□□□□ -0.94
CLIP1-204ENST00000501271 SMIM10L1P0DMW3 83 aa9.19□□□□□ -0.94
CLIP1-204ENST00000501271 NTSR1P30989 418 aa9.19□□□□□ -0.94
CLIP1-204ENST00000501271 IFNA8P32881 189 aa9.19□□□□□ -0.94
CLIP1-204ENST00000501271 TNFRSF4P43489 277 aa9.19□□□□□ -0.94
CLIP1-204ENST00000501271 HTR3AP46098 478 aa9.19□□□□□ -0.94
CLIP1-204ENST00000501271 RNF144AP50876 292 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-204ENST00000501271 ZNF136P52737 540 aa9.19□□□□□ -0.94
CLIP1-204ENST00000501271 ZNF155Q12901 538 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-204ENST00000501271 ZNF791Q3KP31 576 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-204ENST00000501271 ARHGAP11BQ3KRB8 267 aa9.19□□□□□ -0.94
CLIP1-204ENST00000501271 TRMT12Q53H54 448 aaKnown RBP9.19□□□□□ -0.94
CLIP1-204ENST00000501271 CD200R1LQ6Q8B3 271 aa9.19□□□□□ -0.94
CLIP1-204ENST00000501271 UBQLNLQ8IYU4 475 aa9.19□□□□□ -0.94
CLIP1-204ENST00000501271 CAMKK1Q8N5S9 505 aa9.19□□□□□ -0.94
CLIP1-204ENST00000501271 Q8N9G6 341 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-204ENST00000501271 OR4K14Q8NGD5 310 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms