RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 CSDE1O75534 798 aaKnown RBP4.12□□□□□ -1.75
SF3B1-212ENST00000496458 GIG44P09565 113 aaPredicted RBP4.12□□□□□ -1.75
SF3B1-212ENST00000496458 FOSL2P15408 326 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 GLRA1P23415 457 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 MSNP26038 577 aaKnown RBP4.12□□□□□ -1.75
SF3B1-212ENST00000496458 PSMA5P28066 241 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 RFC4P35249 363 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 IGLV3-21P80748 117 aaPredicted RBP4.12□□□□□ -1.75
SF3B1-212ENST00000496458 MECOMQ03112 1051 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 ARHGAP1Q07960 439 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 OVGP1Q12889 678 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 IL24Q13007 206 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 PDE7AQ13946 482 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 SPHARQ15513 63 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 FILIP1LQ4L180 1135 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 IFI44LQ53G44 452 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 PRAMEF8Q5VWM4 474 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 ZNF600Q6ZNG1 722 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 KLHDC8AQ8IYD2 350 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 SLC22A18ASQ8N1D0 253 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 ZNF491Q8N8L2 437 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 DRAXINQ8NBI3 349 aaPredicted RBP4.12□□□□□ -1.75
SF3B1-212ENST00000496458 OR1K1Q8NGR3 316 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 GTSF1Q8WW33 167 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 BADQ92934 168 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 PPP1R16AQ96I34 528 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 TCEANC2Q96MN5 208 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 SSX3Q99909 188 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 NFKBIZQ9BYH8 718 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 RAB17Q9H0T7 212 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 RMND5AQ9H871 391 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 LRRC40Q9H9A6 602 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 PALMDQ9NP74 551 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.12□□□□□ -1.756e-13■■■■□ 23.5
SF3B1-212ENST00000496458 ZNF446Q9NWS9 450 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 ZMAT5Q9UDW3 170 aaKnown RBP4.12□□□□□ -1.75
SF3B1-212ENST00000496458 SNX6Q9UNH7 406 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 NUDCQ9Y266 331 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 MROH5Q6ZUA9 1318 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 WDR19Q8NEZ3 1342 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 NPHP4O75161 1426 aaPredicted RBP4.12□□□□□ -1.75
SF3B1-212ENST00000496458 SMG6Q86US8 1419 aaKnown RBP4.12□□□□□ -1.75
SF3B1-212ENST00000496458 RIMS2Q9UQ26 1411 aa4.12□□□□□ -1.75
SF3B1-212ENST00000496458 SCAF11Q99590 1463 aaKnown RBP4.11□□□□□ -1.75
SF3B1-212ENST00000496458 TMEM131LA2VDJ0 1609 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 CLTCL1P53675 1640 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 A0A087WZY1 265 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 LINC00854A0A1B0GVQ3 168 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 H0YIV9 168 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 CRCPO75575 148 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 IDH1O75874 414 aaKnown RBP4.11□□□□□ -1.75
SF3B1-212ENST00000496458 ANXA9O76027 345 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 SLITRK3O94933 977 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 CXCL14O95715 111 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 FUT1P19526 365 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 PTPN4P29074 926 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 HMGCLP35914 325 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 TAGLN2P37802 199 aaKnown RBP4.11□□□□□ -1.75
SF3B1-212ENST00000496458 CCR4P51679 360 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 SPIBQ01892 262 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 MFGE8Q08431 387 aaPredicted RBP4.11□□□□□ -1.75
SF3B1-212ENST00000496458 LCP2Q13094 533 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 TSTA3Q13630 321 aaPredicted RBP4.11□□□□□ -1.75
SF3B1-212ENST00000496458 GIT2Q14161 759 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 DCAF12Q5T6F0 453 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 LRRC38Q5VT99 294 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 PAMR1Q6UXH9 720 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 ADAMTSL2Q86TH1 951 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 ZNF573Q86YE8 665 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 WDR49Q8IV35 697 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 ZNF679Q8IYX0 411 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 ICA1LQ8NDH6 482 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 OR52K1Q8NGK4 314 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 OR13C2Q8NGS9 318 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 AGR3Q8TD06 166 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 NTNG2Q96CW9 530 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 CCDC51Q96ER9 411 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 ZBED6CLQ96FA7 236 aaPredicted RBP4.11□□□□□ -1.75
SF3B1-212ENST00000496458 DTD2Q96FN9 168 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 CDKN2AIPNLQ96HQ2 116 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 PIWIL1Q96J94 861 aaKnown RBP4.11□□□□□ -1.75
SF3B1-212ENST00000496458 CCDC77Q9BR77 488 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 ZSCAN5AQ9BUG6 496 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 RAB33BQ9H082 229 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 SUDS3Q9H7L9 328 aaPredicted RBP4.11□□□□□ -1.75
SF3B1-212ENST00000496458 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.11□□□□□ -1.75
SF3B1-212ENST00000496458 SMPD3Q9NY59 655 aaPredicted RBP4.11□□□□□ -1.75
SF3B1-212ENST00000496458 CHTOPQ9Y3Y2 248 aaKnown RBP4.11□□□□□ -1.75
SF3B1-212ENST00000496458 MAB21L2Q9Y586 359 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 CCDC144AA2RUR9 1427 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 NCAPD2Q15021 1401 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 ARHGAP23Q9P227 1491 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 ADGRB3O60242 1522 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 SLIT1O75093 1534 aa4.11□□□□□ -1.75
SF3B1-212ENST00000496458 NEURL4Q96JN8 1562 aa4.1□□□□□ -1.75
SF3B1-212ENST00000496458 KDM5AP29375 1690 aaKnown RBP4.1□□□□□ -1.75
SF3B1-212ENST00000496458 MTX2O75431 263 aa4.1□□□□□ -1.75
SF3B1-212ENST00000496458 SCGB2A1O75556 95 aa4.1□□□□□ -1.75
SF3B1-212ENST00000496458 GLCEO94923 617 aa4.1□□□□□ -1.75
SF3B1-212ENST00000496458 PCCBP05166 539 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms