RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 C3orf14Q9HBI5 128 aa16.29■□□□□ 0.2
UPF3A-203ENST00000474056 TAS2R10Q9NYW0 307 aa16.29■□□□□ 0.2
UPF3A-203ENST00000474056 MRTO4Q9UKD2 239 aaKnown RBP16.29■□□□□ 0.2
UPF3A-203ENST00000474056 ABCG2Q9UNQ0 655 aa16.29■□□□□ 0.2
UPF3A-203ENST00000474056 RAP2CQ9Y3L5 183 aa16.29■□□□□ 0.2
UPF3A-203ENST00000474056 DCHS2Q6V1P9 2916 aa16.29■□□□□ 0.2
UPF3A-203ENST00000474056 MPDZO75970 2070 aa16.28■□□□□ 0.2
UPF3A-203ENST00000474056 A0A1W2PRB8 838 aa16.28■□□□□ 0.2
UPF3A-203ENST00000474056 KCNH1O95259 989 aa16.28■□□□□ 0.2
UPF3A-203ENST00000474056 MYZAPP0CAP1 466 aa16.28■□□□□ 0.2
UPF3A-203ENST00000474056 G6PDP11413 515 aa16.28■□□□□ 0.2
UPF3A-203ENST00000474056 DPP4P27487 766 aa16.28■□□□□ 0.2
UPF3A-203ENST00000474056 CEACAM8P31997 349 aaPredicted RBP16.28■□□□□ 0.2
UPF3A-203ENST00000474056 GCKP35557 465 aa16.28■□□□□ 0.2
UPF3A-203ENST00000474056 SLC1A6P48664 564 aa16.28■□□□□ 0.2
UPF3A-203ENST00000474056 NSUN5P2Q63ZY6 315 aa16.28■□□□□ 0.2
UPF3A-203ENST00000474056 TRIM42Q8IWZ5 723 aa16.28■□□□□ 0.2
UPF3A-203ENST00000474056 ANKRD42Q8N9B4 389 aa16.28■□□□□ 0.2
UPF3A-203ENST00000474056 FADS6Q8N9I5 356 aa16.28■□□□□ 0.2
UPF3A-203ENST00000474056 RELL2Q8NC24 303 aaPredicted RBP16.28■□□□□ 0.2
UPF3A-203ENST00000474056 SLC16A11Q8NCK7 471 aa16.28■□□□□ 0.2
UPF3A-203ENST00000474056 OR2M3Q8NG83 312 aa16.28■□□□□ 0.2
UPF3A-203ENST00000474056 C16orf58Q96GQ5 468 aa16.28■□□□□ 0.2
UPF3A-203ENST00000474056 YIPF4Q9BSR8 244 aa16.28■□□□□ 0.2
UPF3A-203ENST00000474056 FAM120CQ9NX05 1096 aaKnown RBP16.28■□□□□ 0.2
UPF3A-203ENST00000474056 RPH3AQ9Y2J0 694 aaPredicted RBP16.28■□□□□ 0.2
UPF3A-203ENST00000474056 CSMD2Q7Z408 3487 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 HSPB2A8KAH6 182 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 ZIC3O60481 467 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 UTS2O95399 124 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 DDX5P17844 614 aaKnown RBP16.27■□□□□ 0.2
UPF3A-203ENST00000474056 TIMP3P35625 211 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 STARP49675 285 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 SRYQ05066 204 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 MAD2L1Q13257 205 aaPredicted RBP16.27■□□□□ 0.2
UPF3A-203ENST00000474056 HSPB2Q16082 182 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 DUSP5Q16690 384 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 SLC25A35Q3KQZ1 300 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 GRAMD1BQ3KR37 738 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 VPS26BQ4G0F5 336 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 EXOSC6Q5RKV6 272 aaKnown RBP16.27■□□□□ 0.2
UPF3A-203ENST00000474056 CPTPQ5TA50 214 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 MFSD12Q6NUT3 480 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 ENPP6Q6UWR7 440 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 APOOLQ6UXV4 268 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 MARCH3Q86UD3 253 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 RIMKLAQ8IXN7 391 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 COQ8BQ96D53 544 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 DTNBP1Q96EV8 351 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 SFXN2Q96NB2 322 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 PAIP2Q9BPZ3 127 aaKnown RBP16.27■□□□□ 0.2
UPF3A-203ENST00000474056 TUBA1CQ9BQE3 449 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 ZCCHC3Q9NUD5 404 aaKnown RBP16.27■□□□□ 0.2
UPF3A-203ENST00000474056 MED11Q9P086 117 aa16.27■□□□□ 0.2
UPF3A-203ENST00000474056 EIF3LQ9Y262 564 aaKnown RBP16.27■□□□□ 0.2
UPF3A-203ENST00000474056 MRPS18CQ9Y3D5 142 aaKnown RBP16.27■□□□□ 0.2
UPF3A-203ENST00000474056 LRBAP50851 2863 aa16.27■□□□□ 0.19
UPF3A-203ENST00000474056 MBD3L4A6NDZ8 208 aaPredicted RBP16.26■□□□□ 0.19
UPF3A-203ENST00000474056 MBD3L3A6NE82 208 aaPredicted RBP16.26■□□□□ 0.19
UPF3A-203ENST00000474056 MBD3L5A6NJ08 208 aaPredicted RBP16.26■□□□□ 0.19
UPF3A-203ENST00000474056 CD8B2A6NJW9 211 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 C6orf47O95873 294 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 IL2RAP01589 272 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 CPN1P15169 458 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 BMP5P22003 454 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 LHX2P50458 406 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 RPL14P50914 215 aaKnown RBP16.26■□□□□ 0.19
UPF3A-203ENST00000474056 ZNF136P52737 540 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 DSCR4P56555 118 aaPredicted RBP16.26■□□□□ 0.19
UPF3A-203ENST00000474056 PRR5P85299 388 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 EMX2Q04743 252 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 STX3Q13277 289 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 LASP1Q14847 261 aaKnown RBP16.26■□□□□ 0.19
UPF3A-203ENST00000474056 SF3B4Q15427 424 aaKnown RBP eCLIP16.26■□□□□ 0.192e-10■■■■■ 27.3
UPF3A-203ENST00000474056 FIGNL1Q6PIW4 674 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 PLXDC2Q6UX71 529 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 ZAR1Q86SH2 424 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 DMRTC2Q8IXT2 367 aaPredicted RBP16.26■□□□□ 0.19
UPF3A-203ENST00000474056 MBD3L2Q8NHZ7 208 aaPredicted RBP16.26■□□□□ 0.19
UPF3A-203ENST00000474056 ZPLD1Q8TCW7 415 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 JADE3Q92613 823 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 C14orf79Q96F83 325 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 CXorf36Q9H7Y0 433 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 AKTIPQ9H8T0 292 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 ATAD3AQ9NVI7 634 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 FBXO34Q9NWN3 711 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 ASIC5Q9NY37 505 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 NOP53Q9NZM5 478 aaKnown RBP16.26■□□□□ 0.19
UPF3A-203ENST00000474056 HAO1Q9UJM8 370 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.26■□□□□ 0.19
UPF3A-203ENST00000474056 SNX8Q9Y5X2 465 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 HEATR5AQ86XA9 2040 aa16.26■□□□□ 0.19
UPF3A-203ENST00000474056 TMEM120BA0PK00 339 aa16.25■□□□□ 0.19
UPF3A-203ENST00000474056 H0Y3Z8 333 aa16.25■□□□□ 0.19
UPF3A-203ENST00000474056 ERLIN1O75477 346 aa16.25■□□□□ 0.19
UPF3A-203ENST00000474056 KCNK2O95069 426 aa16.25■□□□□ 0.19
UPF3A-203ENST00000474056 OXSR1O95747 527 aaPredicted RBP16.25■□□□□ 0.19
UPF3A-203ENST00000474056 ANGPTL1O95841 491 aa16.25■□□□□ 0.19
UPF3A-203ENST00000474056 HMGN2P05204 90 aaKnown RBP16.25■□□□□ 0.19
UPF3A-203ENST00000474056 ALOX5P09917 674 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms