RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 ZWINTO95229 277 aa17.32■□□□□ 0.36
COL7A1-207ENST00000467985 KCNH1O95259 989 aa17.32■□□□□ 0.36
COL7A1-207ENST00000467985 IL18BPO95998 194 aa17.32■□□□□ 0.36
COL7A1-207ENST00000467985 BCKDHAP12694 445 aa17.32■□□□□ 0.36
COL7A1-207ENST00000467985 UQCRC1P31930 480 aa17.32■□□□□ 0.36
COL7A1-207ENST00000467985 HPCAL1P37235 193 aa17.32■□□□□ 0.36
COL7A1-207ENST00000467985 RPL3P39023 403 aaKnown RBP17.32■□□□□ 0.36
COL7A1-207ENST00000467985 FRKP42685 505 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-207ENST00000467985 ZNF136P52737 540 aa17.32■□□□□ 0.36
COL7A1-207ENST00000467985 GANABQ14697 944 aaKnown RBP17.32■□□□□ 0.36
COL7A1-207ENST00000467985 OR5M10Q6IEU7 315 aa17.32■□□□□ 0.36
COL7A1-207ENST00000467985 ANKRD26P1Q6NSI1 321 aa17.32■□□□□ 0.36
COL7A1-207ENST00000467985 RNASE6Q93091 150 aaKnown RBP17.32■□□□□ 0.36
COL7A1-207ENST00000467985 ARL8AQ96BM9 186 aa17.32■□□□□ 0.36
COL7A1-207ENST00000467985 UCN2Q96RP3 112 aa17.32■□□□□ 0.36
COL7A1-207ENST00000467985 SH3GL2Q99962 352 aa17.32■□□□□ 0.36
COL7A1-207ENST00000467985 TUBA1CQ9BQE3 449 aa17.32■□□□□ 0.36
COL7A1-207ENST00000467985 SH3BP4Q9P0V3 963 aa17.32■□□□□ 0.36
COL7A1-207ENST00000467985 NTMQ9P121 344 aa17.32■□□□□ 0.36
COL7A1-207ENST00000467985 HRNRQ86YZ3 2850 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-207ENST00000467985 MED12Q93074 2177 aa17.31■□□□□ 0.36
COL7A1-207ENST00000467985 TMEM233B4DJY2 109 aa17.31■□□□□ 0.36
COL7A1-207ENST00000467985 SCO2O43819 266 aa17.31■□□□□ 0.36
COL7A1-207ENST00000467985 ZIC3O60481 467 aa17.31■□□□□ 0.36
COL7A1-207ENST00000467985 GABRA3P34903 492 aa17.31■□□□□ 0.36
COL7A1-207ENST00000467985 KIR2DL3P43628 341 aa17.31■□□□□ 0.36
COL7A1-207ENST00000467985 LHX2P50458 406 aa17.31■□□□□ 0.36
COL7A1-207ENST00000467985 WNT3P56703 355 aa17.31■□□□□ 0.36
COL7A1-207ENST00000467985 SRYQ05066 204 aa17.31■□□□□ 0.36
COL7A1-207ENST00000467985 BCL2A1Q16548 175 aa17.31■□□□□ 0.36
COL7A1-207ENST00000467985 POMZP3Q6PJE2 187 aa17.31■□□□□ 0.36
COL7A1-207ENST00000467985 FADS6Q8N9I5 356 aa17.31■□□□□ 0.36
COL7A1-207ENST00000467985 CDRT4Q8N9R6 151 aa17.31■□□□□ 0.36
COL7A1-207ENST00000467985 GPR151Q8TDV0 419 aa17.31■□□□□ 0.36
COL7A1-207ENST00000467985 WNT2BQ93097 391 aa17.31■□□□□ 0.36
COL7A1-207ENST00000467985 CIDECQ96AQ7 238 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-207ENST00000467985 TLCD1Q96CP7 247 aa17.31■□□□□ 0.36
COL7A1-207ENST00000467985 PTGES2Q9H7Z7 377 aa17.31■□□□□ 0.36
COL7A1-207ENST00000467985 EQTNQ9NQ60 294 aa17.31■□□□□ 0.36
COL7A1-207ENST00000467985 BAIAP2L1Q9UHR4 511 aa17.31■□□□□ 0.36
COL7A1-207ENST00000467985 LINC01387J3KSC0 135 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 BPGMP07738 259 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 TMIGD3P0DMS9 266 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-207ENST00000467985 ZNF708P17019 499 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 DGKQP52824 942 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 EEF1A1P68104 462 aaKnown RBP17.3■□□□□ 0.36
COL7A1-207ENST00000467985 ATP6AP1LQ52LC2 224 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 ZNF385BQ569K4 471 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 TTMPQ5BVD1 217 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 XKR7Q5GH72 579 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 TNFAIP8L3Q5GJ75 292 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 EEF1A1P5Q5VTE0 462 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 ZCCHC23Q6ZST2 131 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 ADGRE4PQ86SQ3 457 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 TMEM200AQ86VY9 491 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 KIF18BQ86Y91 864 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 NUP43Q8NFH3 380 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 GOT1L1Q8NHS2 421 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-207ENST00000467985 CLHC1Q8NHS4 586 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 HOXB13Q92826 284 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-207ENST00000467985 MS4A4EQ96PG1 132 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 SFXN3Q9BWM7 321 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 TBL1XR1Q9BZK7 514 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 DSN1Q9H410 356 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 SSU72Q9NP77 194 aaKnown RBP17.3■□□□□ 0.36
COL7A1-207ENST00000467985 DOCK7Q96N67 2140 aa17.3■□□□□ 0.36
COL7A1-207ENST00000467985 EMC8O43402 210 aa17.29■□□□□ 0.36
COL7A1-207ENST00000467985 TYROBPO43914 113 aa17.29■□□□□ 0.36
COL7A1-207ENST00000467985 NKX2-2O95096 273 aa17.29■□□□□ 0.36
COL7A1-207ENST00000467985 RCBTB2O95199 551 aa17.29■□□□□ 0.36
COL7A1-207ENST00000467985 UTS2O95399 124 aa17.29■□□□□ 0.36
COL7A1-207ENST00000467985 CREB1P16220 341 aa17.29■□□□□ 0.36
COL7A1-207ENST00000467985 MAP3K8P41279 467 aa17.29■□□□□ 0.36
COL7A1-207ENST00000467985 CLDN18P56856 261 aa17.29■□□□□ 0.36
COL7A1-207ENST00000467985 PRR5P85299 388 aa17.29■□□□□ 0.36
COL7A1-207ENST00000467985 MLC1Q15049 377 aa17.29■□□□□ 0.36
COL7A1-207ENST00000467985 ZCCHC12Q6PEW1 402 aa17.29■□□□□ 0.36
COL7A1-207ENST00000467985 NATD1Q8N6N6 113 aa17.29■□□□□ 0.36
COL7A1-207ENST00000467985 ANKRD42Q8N9B4 389 aa17.29■□□□□ 0.36
COL7A1-207ENST00000467985 C9orf106Q8NAJ2 232 aa17.29■□□□□ 0.36
COL7A1-207ENST00000467985 OR2M3Q8NG83 312 aa17.29■□□□□ 0.36
COL7A1-207ENST00000467985 AGR3Q8TD06 166 aa17.29■□□□□ 0.36
COL7A1-207ENST00000467985 MED4Q9NPJ6 270 aa17.29■□□□□ 0.36
COL7A1-207ENST00000467985 NKIRAS1Q9NYS0 192 aa17.29■□□□□ 0.36
COL7A1-207ENST00000467985 ATP6V1HQ9UI12 483 aa17.29■□□□□ 0.36
COL7A1-207ENST00000467985 RPH3AQ9Y2J0 694 aaPredicted RBP17.29■□□□□ 0.36
COL7A1-207ENST00000467985 CLCA1A8K7I4 914 aa17.28■□□□□ 0.36
COL7A1-207ENST00000467985 SCAMP2O15127 329 aaKnown RBP17.28■□□□□ 0.36
COL7A1-207ENST00000467985 PEX11AO75192 247 aa17.28■□□□□ 0.36
COL7A1-207ENST00000467985 LYPLA1O75608 230 aaPredicted RBP17.28■□□□□ 0.36
COL7A1-207ENST00000467985 PEPDP12955 493 aa17.28■□□□□ 0.36
COL7A1-207ENST00000467985 LCN1P31025 176 aa17.28■□□□□ 0.36
COL7A1-207ENST00000467985 RFX3P48380 749 aa17.28■□□□□ 0.36
COL7A1-207ENST00000467985 STARP49675 285 aa17.28■□□□□ 0.36
COL7A1-207ENST00000467985 PRKAG1P54619 331 aa17.28■□□□□ 0.36
COL7A1-207ENST00000467985 EEFSECP57772 596 aaKnown RBP17.28■□□□□ 0.36
COL7A1-207ENST00000467985 B3GALT5-AS1P59052 145 aa17.28■□□□□ 0.36
COL7A1-207ENST00000467985 C17orf67Q0P5P2 114 aa17.28■□□□□ 0.36
COL7A1-207ENST00000467985 GLYR1Q49A26 553 aaPredicted RBP17.28■□□□□ 0.36
COL7A1-207ENST00000467985 CHMP1BQ7LBR1 199 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms