RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 CCDC25Q86WR0 208 aa6.67□□□□□ -1.34
USP54-208ENST00000461520 DND1Q8IYX4 353 aaKnown RBP6.67□□□□□ -1.34
USP54-208ENST00000461520 ZCCHC7Q8N3Z6 543 aaKnown RBP6.67□□□□□ -1.34
USP54-208ENST00000461520 FAM109AQ8N4B1 249 aa6.67□□□□□ -1.34
USP54-208ENST00000461520 MARVELD2Q8N4S9 558 aa6.67□□□□□ -1.34
USP54-208ENST00000461520 SLC15A4Q8N697 577 aa6.67□□□□□ -1.34
USP54-208ENST00000461520 ZNF321PQ8N8H1 164 aa6.67□□□□□ -1.34
USP54-208ENST00000461520 LILRB4Q8NHJ6 448 aa6.67□□□□□ -1.34
USP54-208ENST00000461520 HUS1BQ8NHY5 278 aa6.67□□□□□ -1.34
USP54-208ENST00000461520 RND1Q92730 232 aa6.67□□□□□ -1.34
USP54-208ENST00000461520 TANKQ92844 425 aa6.67□□□□□ -1.34
USP54-208ENST00000461520 RGMAQ96B86 450 aa6.67□□□□□ -1.34
USP54-208ENST00000461520 NXNL1Q96CM4 212 aa6.67□□□□□ -1.34
USP54-208ENST00000461520 REPS1Q96D71 796 aa6.67□□□□□ -1.34
USP54-208ENST00000461520 SENP5Q96HI0 755 aaPredicted RBP6.67□□□□□ -1.34
USP54-208ENST00000461520 DGAT2Q96PD7 388 aa6.67□□□□□ -1.34
USP54-208ENST00000461520 PELOQ9BRX2 385 aaKnown RBP6.67□□□□□ -1.34
USP54-208ENST00000461520 DEFB127Q9H1M4 99 aa6.67□□□□□ -1.34
USP54-208ENST00000461520 OR51B5Q9H339 312 aa6.67□□□□□ -1.34
USP54-208ENST00000461520 RPF2Q9H7B2 306 aaKnown RBP6.67□□□□□ -1.34
USP54-208ENST00000461520 IL1RL2Q9HB29 575 aa6.67□□□□□ -1.34
USP54-208ENST00000461520 SACM1LQ9NTJ5 587 aa6.67□□□□□ -1.34
USP54-208ENST00000461520 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.67□□□□□ -1.34
USP54-208ENST00000461520 PSD3Q9NYI0 1048 aa6.67□□□□□ -1.34
USP54-208ENST00000461520 VSX1Q9NZR4 365 aaPredicted RBP6.67□□□□□ -1.34
USP54-208ENST00000461520 PHF11Q9UIL8 331 aa6.67□□□□□ -1.34
USP54-208ENST00000461520 ANGPTL3Q9Y5C1 460 aa6.67□□□□□ -1.34
USP54-208ENST00000461520 A0A1B0GVC2 190 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 FAM166BA8MTA8 275 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 FOXO6A8MYZ6 492 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 NPIPA2E9PIF3 369 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 NPIPA3F8WFD2 350 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 PLPP1O14494 284 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 PROM1O43490 865 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 KLK8O60259 260 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 ZNF354AO60765 605 aaPredicted RBP6.66□□□□□ -1.34
USP54-208ENST00000461520 DIAPH2O60879 1101 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 SH3BGRLO75368 114 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 KLHL2O95198 593 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 C2P06681 752 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 CCL3P10147 92 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 GFAPP14136 432 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 IGFBP2P18065 325 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 GALNSP34059 522 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 MAGEA5P43359 124 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 PIK3CGP48736 1102 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 ALDH18A1P54886 795 aaKnown RBP6.66□□□□□ -1.34
USP54-208ENST00000461520 KRTAP10-9P60411 292 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 ID2Q02363 134 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 FOLH1Q04609 750 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 TLE4Q04727 773 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 FOXO1Q12778 655 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 ASPHQ12797 758 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 CUL3Q13618 768 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 DDX39BQ13838 428 aaKnown RBP6.66□□□□□ -1.34
USP54-208ENST00000461520 PCBP2Q15366 365 aaKnown RBP eCLIP6.66□□□□□ -1.34
USP54-208ENST00000461520 TRADDQ15628 312 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 PFKFB4Q16877 469 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 ZNF791Q3KP31 576 aaPredicted RBP6.66□□□□□ -1.34
USP54-208ENST00000461520 KLC3Q6P597 504 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 MEX3BQ6ZN04 569 aaKnown RBP6.66□□□□□ -1.34
USP54-208ENST00000461520 OR4N5Q8IXE1 308 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 C9orf40Q8IXQ3 194 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 ST13P4Q8IZP2 240 aaPredicted RBP6.66□□□□□ -1.34
USP54-208ENST00000461520 CENPLQ8N0S6 344 aaPredicted RBP6.66□□□□□ -1.34
USP54-208ENST00000461520 LNX2Q8N448 690 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 TMEM251Q8N6I4 163 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 TEX9Q8N6V9 391 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 SLC22A8Q8TCC7 542 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 ACTRT2Q8TDY3 377 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 PAQR8Q8TEZ7 354 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 KCTD4Q8WVF5 259 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 FBXL20Q96IG2 436 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 SMC6Q96SB8 1091 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 MTERF1Q99551 399 aaKnown RBP6.66□□□□□ -1.34
USP54-208ENST00000461520 ACTR8Q9H981 624 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 WDR41Q9HAD4 459 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 MCCC2Q9HCC0 563 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 SH2D2AQ9NP31 389 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 KCNJ16Q9NPI9 418 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 SNX15Q9NRS6 342 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 LYARQ9NX58 379 aaKnown RBP6.66□□□□□ -1.34
USP54-208ENST00000461520 RNF6Q9Y252 685 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 ATG4BQ9Y4P1 393 aa6.66□□□□□ -1.34
USP54-208ENST00000461520 TRGV11A0A075B6L2 103 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 A0A096LPK6 155 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 A0A0A6YYD5 115 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 A0A0G2JMM0 328 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 IQANK1A0A1B0GTG1 560 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 A0A1W2PPB8 328 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 A0A1W2PRS3 328 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 OR6C76A6NM76 312 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 KIR3DP1A8MWS1 328 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 G3V3Y1 287 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 FOXE1O00358 373 aaPredicted RBP6.65□□□□□ -1.34
USP54-208ENST00000461520 HCN1O60741 890 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 WDR1O75083 606 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 TOXO94900 526 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 NADKO95544 446 aaPredicted RBP6.65□□□□□ -1.34
USP54-208ENST00000461520 GPR75O95800 540 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms