RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 CHD6Q8TD26 2715 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 LOC101059948A0A1B0GTJ6 334 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 hCG_2039718K7EN88 272 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 FCMRO60667 390 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 CST1P01037 141 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 FESP07332 822 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 GUSBP08236 651 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 LIPCP11150 499 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 HPGDP15428 266 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 CD247P20963 164 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 KCNJ5P48544 419 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 GPR143P51810 404 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 CRYBA2P53672 197 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 KCNC4Q03721 635 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 ST3GAL2Q16842 350 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 SLC34A3Q8N130 599 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 ZNF527Q8NB42 609 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 APCDD1LQ8NCL9 501 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 C17orf47Q8NEP4 570 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 OR11G2Q8NGC1 345 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 OR8K3Q8NH51 312 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 NKD1Q969G9 470 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 MESP1Q9BRJ9 268 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 BDH2Q9BUT1 245 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 QRSL1Q9H0R6 528 aaKnown RBP15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 ASCL3Q9NQ33 180 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 ZNF443Q9Y2A4 671 aaPredicted RBP15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 SH3GLB1Q9Y371 365 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 FAM32AQ9Y421 112 aaKnown RBP15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 AHCTF1Q8WYP5 2266 aa15.84■□□□□ 0.13
CCDC28B-202ENST00000421922 NINQ8N4C6 2090 aa15.83■□□□□ 0.13
CCDC28B-202ENST00000421922 SOCS6O14544 535 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 REM1O75628 298 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 DXOO77932 396 aaKnown RBP15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 THBS1P07996 1170 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 ICAM2P13598 275 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 PRKAR1BP31321 381 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 KCNJ10P78508 379 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 PLAG1Q6DJT9 500 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 KIRREL2Q6UWL6 708 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 PPP1R32Q7Z5V6 425 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 AMIGO2Q86SJ2 522 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 CYP4Z1Q86W10 505 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 VRK2Q86Y07 508 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 ICA1LQ8NDH6 482 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 VANGL1Q8TAA9 524 aaPredicted RBP15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 M1APQ8TC57 530 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 FAM110BQ8TC76 370 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 SLC22A8Q8TCC7 542 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 THAP3Q8WTV1 239 aaPredicted RBP15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 TMBIM1Q969X1 311 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 TP53INP1Q96A56 240 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 EFHD2Q96C19 240 aaPredicted RBP15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 SDCCAG3Q96C92 435 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 HOXD1Q9GZZ0 328 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 SAP130Q9H0E3 1048 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 SEMA6AQ9H2E6 1030 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 ZNF160Q9HCG1 818 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 IL1RAPQ9NPH3 570 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 PCDHGA10Q9Y5H3 936 aa15.83■□□□□ 0.12
CCDC28B-202ENST00000421922 SPEGQ15772 3267 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 NPIPA5A0A0B4J1W7 369 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 CDC14CA4D256 554 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 AGAP5A6NIR3 686 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 NPIPA7E9PJI5 369 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 SYT5O00445 386 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 CLOCKO15516 846 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 IL33O95760 270 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 HPP00738 406 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 ADRB1P08588 477 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 NPIPA8P0DM63 369 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 DCTP40126 519 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 FOXC1Q12948 553 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 ATP6AP1Q15904 470 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 DUSP7Q16829 419 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 CPEB4Q17RY0 729 aaKnown RBP eCLIP15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 DHRS4L2Q6PKH6 230 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 CARM1Q86X55 608 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 PRR22Q8IZ63 422 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 CATSPER1Q8NEC5 780 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 CENPNQ96H22 339 aaPredicted RBP15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 IP6K3Q96PC2 410 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 VCXQ9H320 206 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 AGPAT4Q9NRZ5 378 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 FBXO34Q9NWN3 711 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 DNAJB9Q9UBS3 223 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 RIMS3Q9UJD0 308 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 ZNF223Q9UK11 482 aaPredicted RBP15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 FBXL4Q9UKA2 621 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 PCDHGA6Q9Y5G7 932 aa15.82■□□□□ 0.12
CCDC28B-202ENST00000421922 A0A1W2PQ72 361 aa15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 TO15178 435 aa15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 PRKNO60260 465 aaPredicted RBP15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 E2F6O75461 281 aa15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 ZIC2O95409 532 aaPredicted RBP15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 SEMG1P04279 462 aa15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 TNFRSF1BP20333 461 aa15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 LCN1P31025 176 aa15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 MAGEA2P43356 314 aa15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 OR1E2P47887 323 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms