RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 HINT2Q9BX68 163 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 SLC19A3Q9BZV2 496 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 GCM1Q9NP62 436 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 CNIH4Q9P003 139 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 PCDHGA2Q9Y5H1 932 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 FAM171A2A8MVW0 826 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 RAD1O60671 282 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 PRAMEF11O60813 436 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 HLA-AP01891 365 aaKnown RBP11.24□□□□□ -0.61
SYNPO-202ENST00000394243 DHRS4L1P0CG22 281 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 MSX1P28360 303 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 UNQ6126/PRO20091Q6UXV3 157 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 KDM8Q8N371 416 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 OR52N2Q8NGI0 321 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 OR52H1Q8NGJ2 320 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 ZNF778Q96MU6 729 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 RCE1Q9Y256 329 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 CITO14578 2027 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 ZNF860A6NHJ4 632 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 NPC1O15118 1278 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 ALX3O95076 343 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 GKP32189 559 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 RACK1P63244 317 aaKnown RBP11.24□□□□□ -0.61
SYNPO-202ENST00000394243 SLC35B4Q969S0 331 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 A0A0B4J2A0 478 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 ZNF487B1APH4 448 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 LAMP1P11279 417 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 PFKLP17858 780 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 CXCR4P61073 352 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 P2RY14Q15391 338 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 TCTE1Q5JU00 501 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 HACD4Q5VWC8 232 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 TSSK4Q6SA08 328 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 DNAJC22Q8N4W6 341 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 C2CD4CQ8TF44 421 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 ECHDC3Q96DC8 303 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 SGCZQ96LD1 299 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 PSD2Q9BQI7 771 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 G6PC3Q9BUM1 346 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 SHPKQ9UHJ6 478 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 NFAT5O94916 1531 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 A0A0D9SEW6 157 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 PHYHO14832 338 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 SIX6O95475 246 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 IL1AP01583 271 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 ZNF30P17039 623 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 RAB3AP20336 220 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 HLA-DMAP28067 261 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 RBMS1P29558 406 aaKnown RBP11.23□□□□□ -0.61
SYNPO-202ENST00000394243 NKX3-2P78367 333 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 VASNQ6EMK4 673 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 OR56B4Q8NH76 319 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 OR1S1Q8NH92 325 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 PITX2Q99697 317 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 PRRT1Q99946 306 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 SDR39U1Q9NRG7 319 aaPredicted RBP11.23□□□□□ -0.61
SYNPO-202ENST00000394243 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.23□□□□□ -0.61
SYNPO-202ENST00000394243 OSGIN1Q9UJX0 560 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 B4DGG1 531 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 STK17BO94768 372 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 INHAP05111 366 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 FASLGP48023 281 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 CXADRP78310 365 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 SMN1Q16637 294 aaKnown RBP11.23□□□□□ -0.61
SYNPO-202ENST00000394243 CYS1Q717R9 158 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 MEX3DQ86XN8 651 aaKnown RBP11.23□□□□□ -0.61
SYNPO-202ENST00000394243 CYB561A3Q8NBI2 242 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 C2orf15Q8WU43 125 aaKnown RBP11.23□□□□□ -0.61
SYNPO-202ENST00000394243 ZMYND19Q96E35 227 aaPredicted RBP11.23□□□□□ -0.61
SYNPO-202ENST00000394243 ACKR4Q9NPB9 350 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 CRTAC1Q9NQ79 661 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 KCNK6Q9Y257 313 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 TARBP1Q13395 1621 aaKnown RBP11.23□□□□□ -0.61
SYNPO-202ENST00000394243 FAM72CH0Y354 149 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 CRTAPO75718 401 aaPredicted RBP11.23□□□□□ -0.61
SYNPO-202ENST00000394243 TMEM115Q12893 351 aaPredicted RBP11.23□□□□□ -0.61
SYNPO-202ENST00000394243 PIN1Q13526 163 aaPredicted RBP11.23□□□□□ -0.61
SYNPO-202ENST00000394243 RBM39Q14498 530 aaKnown RBP11.23□□□□□ -0.61
SYNPO-202ENST00000394243 NNATQ16517 81 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 FAM72AQ5TYM5 149 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 FAM72DQ6L9T8 149 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 FAM180BQ6P0A1 224 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 PGM2L1Q6PCE3 622 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 METAP1DQ6UB28 335 aaPredicted RBP11.23□□□□□ -0.61
SYNPO-202ENST00000394243 FAM72BQ86X60 149 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 ZNF808Q8N4W9 903 aaPredicted RBP11.23□□□□□ -0.61
SYNPO-202ENST00000394243 HUS1BQ8NHY5 278 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 DOK4Q8TEW6 326 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 SETD7Q8WTS6 366 aaKnown RBP11.23□□□□□ -0.61
SYNPO-202ENST00000394243 HPSE2Q8WWQ2 592 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 GGHQ92820 318 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 SYPP08247 313 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 SYN1P17600 705 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 IGFBP4P22692 258 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 MRPS10P82664 201 aaKnown RBP11.23□□□□□ -0.61
SYNPO-202ENST00000394243 RGNQ15493 299 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 ZNF439Q8NDP4 499 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 SMAP2Q8WU79 429 aaPredicted RBP11.23□□□□□ -0.61
SYNPO-202ENST00000394243 ZNF681Q96N22 645 aa11.23□□□□□ -0.61
SYNPO-202ENST00000394243 SPIN2AQ99865 258 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms