RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 BCL2A1Q16548 175 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 ZNF789Q5FWF6 425 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 MRPL21Q7Z2W9 205 aaKnown RBP12.97□□□□□ -0.33
COL4A1-201ENST00000375820 OR5L2Q8NGL0 311 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 ALG8Q9BVK2 526 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 RPS10P5Q9NQ39 176 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 IER3IP1Q9Y5U9 82 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 A0A0A6YYC8 382 aaPredicted RBP12.97□□□□□ -0.33
COL4A1-201ENST00000375820 I3L1I5 382 aaPredicted RBP12.97□□□□□ -0.33
COL4A1-201ENST00000375820 GGT1P19440 569 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 FDXRP22570 491 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 SEC61A1P61619 476 aaKnown RBP12.97□□□□□ -0.33
COL4A1-201ENST00000375820 OR52W1Q6IF63 320 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 CPOQ8IVL8 374 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 OR5W2Q8NH69 310 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 DEDD2Q8WXF8 326 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 MYLIPQ8WY64 445 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 TEPSINQ96N21 525 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 Q9Y3F1 56 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 TRAV27A0A087WT01 109 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 FAM155AB1AL88 458 aaPredicted RBP12.97□□□□□ -0.33
COL4A1-201ENST00000375820 IFNA4P05014 189 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 BDKRB2P30411 391 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 IDH3GP51553 393 aaPredicted RBP12.97□□□□□ -0.33
COL4A1-201ENST00000375820 ELAVL3Q14576 367 aaKnown RBP12.97□□□□□ -0.33
COL4A1-201ENST00000375820 MBTPS1Q14703 1052 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 VASH1Q7L8A9 365 aaPredicted RBP12.97□□□□□ -0.33
COL4A1-201ENST00000375820 CD163Q86VB7 1156 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 FAM83FQ8NEG4 500 aaPredicted RBP12.97□□□□□ -0.33
COL4A1-201ENST00000375820 OR2T4Q8NH00 348 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 RNF32Q9H0A6 362 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 FAM234AQ9H0X4 552 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 TEX10Q9NXF1 929 aaPredicted RBP12.97□□□□□ -0.33
COL4A1-201ENST00000375820 TMEM9Q9P0T7 183 aa12.97□□□□□ -0.33
COL4A1-201ENST00000375820 ZNF223Q9UK11 482 aaPredicted RBP12.97□□□□□ -0.33
COL4A1-201ENST00000375820 ALDOBP05062 364 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 FGFBP1Q14512 234 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 EXOSC7Q15024 291 aaKnown RBP12.96□□□□□ -0.33
COL4A1-201ENST00000375820 PDZD9Q8IXQ8 264 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 TMIGD2Q96BF3 282 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 PTERQ96BW5 349 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 ACKR4Q9NPB9 350 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 H3BQ06 376 aaPredicted RBP12.96□□□□□ -0.33
COL4A1-201ENST00000375820 ERVK-25P63136 954 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 LETMD1Q6P1Q0 360 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 PLXDC1Q8IUK5 500 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 CDS1Q92903 461 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 SLC2A13Q96QE2 648 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 ACTRT3Q9BYD9 372 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 B3GNT3Q9Y2A9 372 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 RIMBP3CA6NJZ7 1639 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 RIMBP3BA6NNM3 1639 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 RIMBP3Q9UFD9 1639 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 GJB3O75712 270 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 NCR1O76036 304 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 EEF1A2Q05639 463 aaKnown RBP12.96□□□□□ -0.33
COL4A1-201ENST00000375820 ANKK1Q8NFD2 765 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 RAB7BQ96AH8 199 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 HHIPL1Q96JK4 782 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 ELF4Q99607 663 aaPredicted RBP12.96□□□□□ -0.33
COL4A1-201ENST00000375820 TESQ9UGI8 421 aaKnown RBP12.96□□□□□ -0.33
COL4A1-201ENST00000375820 IQCF3P0C7M6 154 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 AGTR1P30556 359 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 CLCN2P51788 898 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 FGL1Q08830 312 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 PTPRRQ15256 657 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 PIWIL3Q7Z3Z3 882 aaKnown RBP12.96□□□□□ -0.33
COL4A1-201ENST00000375820 ZNF610Q8N9Z0 462 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 OR51Q1Q8NH59 317 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 ZNF420Q8TAQ5 688 aaPredicted RBP12.96□□□□□ -0.33
COL4A1-201ENST00000375820 RHBDD1Q8TEB9 315 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 FUBP1Q96AE4 644 aaKnown RBP12.96□□□□□ -0.33
COL4A1-201ENST00000375820 MALSU1Q96EH3 234 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 SFXN2Q96NB2 322 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 C16orf70Q9BSU1 422 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 PBDC1Q9BVG4 233 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 XYLT2Q9H1B5 865 aa12.96□□□□□ -0.33
COL4A1-201ENST00000375820 PEAK1Q9H792 1746 aa12.96□□□□□ -0.34
COL4A1-201ENST00000375820 LOC102723532A0A0G2JNH3 316 aa12.96□□□□□ -0.34
COL4A1-201ENST00000375820 F10P00742 488 aa12.96□□□□□ -0.34
COL4A1-201ENST00000375820 PRKAR1BP31321 381 aa12.96□□□□□ -0.34
COL4A1-201ENST00000375820 RFC2P35250 354 aa12.96□□□□□ -0.34
COL4A1-201ENST00000375820 GABRA2P47869 451 aa12.96□□□□□ -0.34
COL4A1-201ENST00000375820 ALDH3B2P48448 385 aa12.96□□□□□ -0.34
COL4A1-201ENST00000375820 ABHD17BQ5VST6 288 aa12.96□□□□□ -0.34
COL4A1-201ENST00000375820 SYNPRQ8TBG9 265 aa12.96□□□□□ -0.34
COL4A1-201ENST00000375820 TM9SF4Q92544 642 aa12.96□□□□□ -0.34
COL4A1-201ENST00000375820 RNF186Q9NXI6 227 aa12.96□□□□□ -0.34
COL4A1-201ENST00000375820 TFP02787 698 aa12.96□□□□□ -0.34
COL4A1-201ENST00000375820 MT-ND4P03905 459 aa12.96□□□□□ -0.34
COL4A1-201ENST00000375820 SERPINA2P20848 420 aa12.96□□□□□ -0.34
COL4A1-201ENST00000375820 NTSR1P30989 418 aa12.96□□□□□ -0.34
COL4A1-201ENST00000375820 MAGEA6P43360 314 aa12.96□□□□□ -0.34
COL4A1-201ENST00000375820 ADARB1P78563 741 aaKnown RBP12.96□□□□□ -0.34
COL4A1-201ENST00000375820 MGAT3Q09327 533 aa12.96□□□□□ -0.34
COL4A1-201ENST00000375820 CCNJQ5T5M9 372 aa12.96□□□□□ -0.34
COL4A1-201ENST00000375820 FBXW12Q6X9E4 464 aa12.96□□□□□ -0.34
COL4A1-201ENST00000375820 ANKRD13BQ86YJ7 626 aa12.96□□□□□ -0.34
COL4A1-201ENST00000375820 CHDHQ8NE62 594 aaPredicted RBP12.96□□□□□ -0.34
COL4A1-201ENST00000375820 RHEBL1Q8TAI7 183 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms