RNA–Protein interactions for RNA: ENST00000357943.9

CCNE1-202, Transcript of cyclin E1, humanhuman

TSL 1 (best) BASIC

Gene CCNE1, Length 1,641 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNE1-202ENST00000357943 RPS26P11Q5JNZ5 115 aaPredicted RBP13.66□□□□□ -0.22
CCNE1-202ENST00000357943 IGFL3Q6UXB1 125 aa13.66□□□□□ -0.22
CCNE1-202ENST00000357943 IFNEQ86WN2 208 aa13.66□□□□□ -0.22
CCNE1-202ENST00000357943 ZZZ3Q8IYH5 903 aa13.66□□□□□ -0.22
CCNE1-202ENST00000357943 RNF148Q8N7C7 305 aa13.66□□□□□ -0.22
CCNE1-202ENST00000357943 EXD3Q8N9H8 876 aa13.66□□□□□ -0.22
CCNE1-202ENST00000357943 TRNT1Q96Q11 434 aaKnown RBP13.66□□□□□ -0.22
CCNE1-202ENST00000357943 NODALQ96S42 347 aa13.66□□□□□ -0.22
CCNE1-202ENST00000357943 CDRT15Q96T59 188 aa13.66□□□□□ -0.22
CCNE1-202ENST00000357943 G6PC3Q9BUM1 346 aa13.66□□□□□ -0.22
CCNE1-202ENST00000357943 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.66□□□□□ -0.22
CCNE1-202ENST00000357943 SLC38A1Q9H2H9 487 aa13.66□□□□□ -0.22
CCNE1-202ENST00000357943 SH2D2AQ9NP31 389 aa13.66□□□□□ -0.22
CCNE1-202ENST00000357943 A4GALTQ9NPC4 353 aa13.66□□□□□ -0.22
CCNE1-202ENST00000357943 ZNF71Q9NQZ8 489 aaPredicted RBP13.66□□□□□ -0.22
CCNE1-202ENST00000357943 ZNF451Q9Y4E5 1061 aa13.66□□□□□ -0.22
CCNE1-202ENST00000357943 CHCHD2Q9Y6H1 151 aaPredicted RBP13.66□□□□□ -0.22
CCNE1-202ENST00000357943 EPG5Q9HCE0 2579 aa13.66□□□□□ -0.22
CCNE1-202ENST00000357943 PRORSD1PA6NEY8 169 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 CCL3P10147 92 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 ATP6V1C1P21283 382 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 TNFSF10P50591 281 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 CDK6Q00534 326 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 LIPEQ05469 1076 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 GPR68Q15743 365 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 FLYWCH1Q4VC44 716 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 BICRALQ6AI39 1079 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 TYW3Q6IPR3 259 aaKnown RBP13.65□□□□□ -0.22
CCNE1-202ENST00000357943 FRRS1Q6ZNA5 592 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 NUP54Q7Z3B4 507 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 GPALPP1Q8IXQ4 340 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 DND1Q8IYX4 353 aaKnown RBP13.65□□□□□ -0.22
CCNE1-202ENST00000357943 OR4C3Q8NH37 302 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 NFKBIDQ8NI38 313 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 PAQR8Q8TEZ7 354 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 TM9SF4Q92544 642 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 ZG16BQ96DA0 208 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 SGCZQ96LD1 299 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 TREX2Q9BQ50 279 aaPredicted RBP13.65□□□□□ -0.22
CCNE1-202ENST00000357943 HES7Q9BYE0 225 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 QRSL1Q9H0R6 528 aaKnown RBP13.65□□□□□ -0.22
CCNE1-202ENST00000357943 ALG2Q9H553 416 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 RYDENQ9NUL5 291 aaKnown RBP13.65□□□□□ -0.22
CCNE1-202ENST00000357943 RRP15Q9Y3B9 282 aaKnown RBP13.65□□□□□ -0.22
CCNE1-202ENST00000357943 WDR45Q9Y484 360 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 PCDHGB7Q9Y5F8 929 aa13.65□□□□□ -0.22
CCNE1-202ENST00000357943 TNRC6AQ8NDV7 1962 aaKnown RBP13.65□□□□□ -0.22
CCNE1-202ENST00000357943 TMEM247A6NEH6 219 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 CDK2AP1O14519 115 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 SLC25A12O75746 678 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 UTS2O95399 124 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 GSK3BP49841 420 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 CRISP3P54108 245 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 HPCAP84074 193 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 SCARB2Q14108 478 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 EFR3AQ14156 821 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 VMACQ2NL98 169 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 GRAMD1BQ3KR37 738 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 PCSK4Q6UW60 755 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 LRRC74BQ6ZQY2 392 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 RTL4Q6ZR62 310 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 ASB18Q6ZVZ8 466 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 HMGN2P46Q86SG4 172 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 GOLM1Q8NBJ4 401 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 C11orf65Q8NCR3 313 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 FAM156AQ8NDB6 213 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 MDS2Q8NDY4 140 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 OR2T12Q8NG77 320 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 C9orf43Q8TAL5 461 aaPredicted RBP13.64□□□□□ -0.23
CCNE1-202ENST00000357943 TMCO6Q96DC7 493 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 REXO5Q96IC2 774 aaKnown RBP13.64□□□□□ -0.23
CCNE1-202ENST00000357943 BTBD10Q9BSF8 475 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 ADNPQ9H2P0 1102 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 TUBD1Q9UJT1 453 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 CENPVL1A0A0U1RR11 272 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 FAM220BPB1ANY3 271 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 ERVH48-1M5A8F1 160 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 TP53I11O14683 189 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 GYG2O15488 501 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 HS6ST1O60243 411 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 KIAA0513O60268 411 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 HNRNPCL1O60812 293 aaKnown RBP13.64□□□□□ -0.23
CCNE1-202ENST00000357943 UGT2B17O75795 530 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 AQP1P29972 269 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 DCTP40126 519 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 EEFSECP57772 596 aaKnown RBP13.64□□□□□ -0.23
CCNE1-202ENST00000357943 RBBP4Q09028 425 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 ZNF630Q2M218 657 aaPredicted RBP13.64□□□□□ -0.23
CCNE1-202ENST00000357943 PRAMEF20Q5VT98 475 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 SLC22A10Q63ZE4 541 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 APOOLQ6UXV4 268 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 BNC2Q6ZN30 1099 aaPredicted RBP13.64□□□□□ -0.23
CCNE1-202ENST00000357943 ZADH2Q8N4Q0 377 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 RBMXL3Q8N7X1 1067 aaKnown RBP13.64□□□□□ -0.23
CCNE1-202ENST00000357943 PSD4Q8NDX1 1056 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 SPPL2AQ8TCT8 520 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 GRHL3Q8TE85 626 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 SPATA9Q9BWV2 254 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 SAP130Q9H0E3 1048 aa13.64□□□□□ -0.23
CCNE1-202ENST00000357943 KLHL1Q9NR64 748 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms