RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 AP3M1Q9Y2T2 418 aa20.37■□□□□ 0.85
SDC3-202ENST00000339394 PIEZO2Q9H5I5 2752 aa20.36■□□□□ 0.85
SDC3-202ENST00000339394 TMEM247A6NEH6 219 aa20.36■□□□□ 0.85
SDC3-202ENST00000339394 SLC25A12O75746 678 aa20.36■□□□□ 0.85
SDC3-202ENST00000339394 ARAFP10398 606 aa20.36■□□□□ 0.85
SDC3-202ENST00000339394 HPCAP84074 193 aa20.36■□□□□ 0.85
SDC3-202ENST00000339394 FLYWCH1Q4VC44 716 aa20.36■□□□□ 0.85
SDC3-202ENST00000339394 AP1ARQ63HQ0 302 aa20.36■□□□□ 0.85
SDC3-202ENST00000339394 TYW3Q6IPR3 259 aaKnown RBP20.36■□□□□ 0.85
SDC3-202ENST00000339394 MDS2Q8NDY4 140 aa20.36■□□□□ 0.85
SDC3-202ENST00000339394 OR4C3Q8NH37 302 aa20.36■□□□□ 0.85
SDC3-202ENST00000339394 PAQR8Q8TEZ7 354 aa20.36■□□□□ 0.85
SDC3-202ENST00000339394 SLC7A6OSQ96CW6 309 aaPredicted RBP20.36■□□□□ 0.85
SDC3-202ENST00000339394 TMCO6Q96DC7 493 aa20.36■□□□□ 0.85
SDC3-202ENST00000339394 NODALQ96S42 347 aa20.36■□□□□ 0.85
SDC3-202ENST00000339394 CDRT15Q96T59 188 aa20.36■□□□□ 0.85
SDC3-202ENST00000339394 RUBCNLQ9H714 662 aa20.36■□□□□ 0.85
SDC3-202ENST00000339394 ADA2Q9NZK5 511 aa20.36■□□□□ 0.85
SDC3-202ENST00000339394 FLRT3Q9NZU0 649 aa20.36■□□□□ 0.85
SDC3-202ENST00000339394 WDR45Q9Y484 360 aa20.36■□□□□ 0.85
SDC3-202ENST00000339394 HS6ST1O60243 411 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 ICOSLGO75144 302 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 UTS2O95399 124 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 CCL3P10147 92 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 CRISP3P54108 245 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 CDK6Q00534 326 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 CHRNEQ04844 493 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 LIPEQ05469 1076 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 GNA13Q14344 377 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 LACTB2Q53H82 288 aaPredicted RBP20.35■□□□□ 0.85
SDC3-202ENST00000339394 SLC22A10Q63ZE4 541 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 FRRS1Q6ZNA5 592 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 LRRC74BQ6ZQY2 392 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 IFNEQ86WN2 208 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 HPS6Q86YV9 775 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 C11orf65Q8NCR3 313 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 PSD4Q8NDX1 1056 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 SPPL2AQ8TCT8 520 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 REXO5Q96IC2 774 aaKnown RBP20.35■□□□□ 0.85
SDC3-202ENST00000339394 SECISBP2Q96T21 854 aaKnown RBP20.35■□□□□ 0.85
SDC3-202ENST00000339394 TREX2Q9BQ50 279 aaPredicted RBP20.35■□□□□ 0.85
SDC3-202ENST00000339394 SPATA9Q9BWV2 254 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 SAP130Q9H0E3 1048 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 SLC38A1Q9H2H9 487 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 GMPR2Q9P2T1 348 aaKnown RBP20.35■□□□□ 0.85
SDC3-202ENST00000339394 USP22Q9UPT9 525 aa20.35■□□□□ 0.85
SDC3-202ENST00000339394 ATP5HO75947 161 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 GUSBP08236 651 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 LCN1P31025 176 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 RBBP4Q09028 425 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 GPR68Q15743 365 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 ZNF630Q2M218 657 aaPredicted RBP20.34■□□□□ 0.85
SDC3-202ENST00000339394 PCSK4Q6UW60 755 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 ZZZ3Q8IYH5 903 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 RBMXL3Q8N7X1 1067 aaKnown RBP20.34■□□□□ 0.85
SDC3-202ENST00000339394 NFKBIDQ8NI38 313 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 ZG16BQ96DA0 208 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 HES7Q9BYE0 225 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 ALG2Q9H553 416 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 TIMMDC1Q9NPL8 285 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 POLE3Q9NRF9 147 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 PACSIN3Q9UKS6 424 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 NPIPA5A0A0B4J1W7 369 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 C5orf58C9J3I9 102 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 NPIPA7E9PJI5 369 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 DPM1O60762 260 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 NPIPA8P0DM63 369 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 CD46P15529 392 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 SCARB2Q14108 478 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 VMACQ2NL98 169 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 GRAMD1BQ3KR37 738 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 RPS26P11Q5JNZ5 115 aaPredicted RBP20.34■□□□□ 0.85
SDC3-202ENST00000339394 BICRALQ6AI39 1079 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 SLC25A25Q6KCM7 469 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 REEP3Q6NUK4 255 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 METTL25Q8N6Q8 603 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 OR2T12Q8NG77 320 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 GRHL3Q8TE85 626 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 UBQLN4Q9NRR5 601 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 CALML5Q9NZT1 146 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 CNIH4Q9P003 139 aa20.34■□□□□ 0.85
SDC3-202ENST00000339394 CNTRLQ7Z7A1 2325 aa20.33■□□□□ 0.85
SDC3-202ENST00000339394 CPAMD8Q8IZJ3 1885 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 TRAV17A0A0B4J275 112 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 PRORSD1PA6NEY8 169 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 KIAA0513O60268 411 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 HNRNPCL1O60812 293 aaKnown RBP20.33■□□□□ 0.84
SDC3-202ENST00000339394 PGM3O95394 542 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 SP1P08047 785 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 TBXA2RP21731 343 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 EVI2BP34910 448 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 DCTP40126 519 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 CASP3P42574 277 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 GSK3BP49841 420 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 EEFSECP57772 596 aaKnown RBP20.33■□□□□ 0.84
SDC3-202ENST00000339394 RPP38P78345 283 aaKnown RBP20.33■□□□□ 0.84
SDC3-202ENST00000339394 PRAMEF20Q5VT98 475 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 Q6ZS92 163 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 CCDC121Q6ZUS5 278 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 ZNF619Q8N2I2 560 aa20.33■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms