RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 NUDT22Q9BRQ3 303 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 FAM234AQ9H0X4 552 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 PRDM9Q9NQV7 894 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 OR14J1Q9UGF5 321 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 CAMTA1Q9Y6Y1 1673 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 FZD9O00144 591 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 PRAMEF2O60811 474 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 SPDEFO95238 335 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 IFNA4P05014 189 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 LAMP1P11279 417 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 XCR1P46094 333 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 ATP4BP51164 291 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 SEC61A1P61619 476 aaKnown RBP11.95□□□□□ -0.5
SDC3-201ENST00000336798 C6orf141Q5SZD1 244 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 OR52W1Q6IF63 320 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 BBS1Q8NFJ9 593 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 TUBA1CQ9BQE3 449 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 SUCNR1Q9BXA5 334 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 SMIM3Q9BZL3 60 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 SLA2Q9H6Q3 261 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 CD93Q9NPY3 652 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 EBF1Q9UH73 591 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 ADAMTS6Q9UKP5 1117 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 TP53TG5Q9Y2B4 290 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 AK6Q9Y3D8 172 aaKnown RBP11.95□□□□□ -0.5
SDC3-201ENST00000336798 ATP6V1G2-DDX39BF2Z307 99 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 HSPB6O14558 160 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 CD79BP40259 229 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 INCA1Q0VD86 236 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 ACBD7Q8N6N7 88 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 OR2T4Q8NH00 348 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 TEPSINQ96N21 525 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 C1orf196B1AJZ1 125 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 LCN10Q6JVE6 187 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 RLN3Q8WXF3 142 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 FEVQ99581 238 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 GJE1A6NN92 205 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 NUPL2O15504 423 aaKnown RBP11.94□□□□□ -0.5
SDC3-201ENST00000336798 LILRB3O75022 631 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 TSPAN15O95858 294 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 HRH2P25021 359 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 SPINT3P49223 89 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 DEFA6Q01524 100 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 FADDQ13158 208 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 P2RY14Q15391 338 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 NPY5RQ15761 445 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 CDKN3Q16667 212 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 SLC39A5Q6ZMH5 540 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 CLEC1AQ8NC01 280 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 ZNF384Q8TF68 577 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 ITPKCQ96DU7 683 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 FAM53CQ9NYF3 392 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 NLKQ9UBE8 527 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 KIDINS220Q9ULH0 1771 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 BCAS1O75363 584 aaPredicted RBP11.94□□□□□ -0.5
SDC3-201ENST00000336798 CBX7O95931 251 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 NETO1Q8TDF5 533 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 MMP27Q9H306 513 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 CSNK1G3Q9Y6M4 447 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 PLIN4Q96Q06 1357 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 GPR32O75388 356 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 ALDOAP04075 364 aaKnown RBP11.94□□□□□ -0.5
SDC3-201ENST00000336798 CHRM4P08173 479 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 SLC35E2BP0CK96 405 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 POU3F2P20265 443 aaPredicted RBP11.94□□□□□ -0.5
SDC3-201ENST00000336798 CNR2P34972 360 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 ADARB1P78563 741 aaKnown RBP11.94□□□□□ -0.5
SDC3-201ENST00000336798 BPHLQ86WA6 291 aaPredicted RBP11.94□□□□□ -0.5
SDC3-201ENST00000336798 OR51Q1Q8NH59 317 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 PCYT2Q99447 389 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 ACTRT3Q9BYD9 372 aa11.94□□□□□ -0.5
SDC3-201ENST00000336798 ZNF780AO75290 641 aaPredicted RBP11.93□□□□□ -0.5
SDC3-201ENST00000336798 EEDO75530 441 aaKnown RBP11.93□□□□□ -0.5
SDC3-201ENST00000336798 IFNA10P01566 189 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 DRD2P14416 443 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 MTNR1AP48039 350 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 SLC35G1Q2M3R5 365 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 PLCXD3Q63HM9 321 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 NAGSQ8N159 534 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 MALSU1Q96EH3 234 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 A6NIN4 97 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 TTLL8A6PVC2 850 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 UBFD1O14562 309 aaKnown RBP11.93□□□□□ -0.5
SDC3-201ENST00000336798 SULT1B1O43704 296 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 ARAFP10398 606 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 ALDH3B2P48448 385 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 HNF4GQ14541 408 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 COMMD6Q7Z4G1 85 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 ZFYVE21Q9BQ24 234 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 DYNLRB1Q9NP97 96 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 OBP2BQ9NPH6 170 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 ZNF355PQ9NSJ1 428 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 HEMK1Q9Y5R4 338 aaPredicted RBP11.93□□□□□ -0.5
SDC3-201ENST00000336798 ANKRD30BLA7E2S9 258 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 GYPBP06028 91 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 DCNP07585 359 aaKnown RBP11.93□□□□□ -0.5
SDC3-201ENST00000336798 HNRNPA1P09651 372 aaKnown RBP eCLIP11.93□□□□□ -0.5
SDC3-201ENST00000336798 NCS1P62166 190 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 NKX3-2P78367 333 aa11.93□□□□□ -0.5
SDC3-201ENST00000336798 NR0B2Q15466 257 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms