RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 CASP7P55210 303 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 RAP1BP61224 184 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 RAP1AP62834 184 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 TMEM156Q8N614 296 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 DBF4BQ8NFT6 615 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 TXNDC15Q96J42 360 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 FCF1Q9Y324 198 aaKnown RBP13.57□□□□□ -0.24
COL7A1-201ENST00000328333 MED1Q15648 1581 aaPredicted RBP13.57□□□□□ -0.24
COL7A1-201ENST00000328333 ZNF536O15090 1300 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 ATRNL1Q5VV63 1379 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 GALNT10Q86SR1 603 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 LRRC56Q8IYG6 542 aaPredicted RBP13.57□□□□□ -0.24
COL7A1-201ENST00000328333 OR2A12Q8NGT7 310 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 DAZLQ92904 295 aaKnown RBP13.57□□□□□ -0.24
COL7A1-201ENST00000328333 TEPSINQ96N21 525 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 SORCS2Q96PQ0 1159 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 FEVQ99581 238 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 SDR39U1Q9NRG7 319 aaPredicted RBP13.57□□□□□ -0.24
COL7A1-201ENST00000328333 RNF11Q9Y3C5 154 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 RPS13P62277 151 aaKnown RBP13.57□□□□□ -0.24
COL7A1-201ENST00000328333 CSNK2A1P68400 391 aaPredicted RBP13.57□□□□□ -0.24
COL7A1-201ENST00000328333 TECRLQ5HYJ1 363 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 STEAP4Q687X5 459 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 TMPPEQ6ZT21 453 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 CSNK2A3Q8NEV1 391 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 OR5D14Q8NGL3 314 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 RDH14Q9HBH5 336 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 SERTAD3Q9UJW9 196 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 NR2E3Q9Y5X4 410 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 KITLGP21583 273 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 MLLT11Q13015 90 aaPredicted RBP13.57□□□□□ -0.24
COL7A1-201ENST00000328333 MPEG1Q2M385 716 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 ARHGAP39Q9C0H5 1083 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 GALPQ9UBC7 116 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 ALPK2Q86TB3 2170 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 SMCHD1A6NHR9 2005 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 ZNF623O75123 536 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 SELPP16109 830 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 BRCC3P46736 316 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 CDK5R2Q13319 367 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 TPRG1Q6ZUI0 275 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 TMPRSS7Q7RTY8 843 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 SERPINA12Q8IW75 414 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 C2orf73Q8N5S3 287 aaPredicted RBP13.57□□□□□ -0.24
COL7A1-201ENST00000328333 STEAP2Q8NFT2 490 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 OR5H6Q8NGV6 325 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 PMEPA1Q969W9 287 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 DDIT4LQ96D03 193 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 ZNF681Q96N22 645 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 B3GNT2Q9NY97 397 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 CPNE7Q9UBL6 633 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 SLC6A14Q9UN76 642 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 DOCK7Q96N67 2140 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 SLC22A23A1A5C7 686 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 A8MVM7 634 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 TNFP01375 233 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 PRPH2P23942 346 aa13.57□□□□□ -0.24
COL7A1-201ENST00000328333 LRP5LA4QPB2 252 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 SERPINA7P05543 415 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 IRF2P14316 349 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 CNR1P21554 472 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 TGM4P49221 684 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 NFATC2Q13469 925 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 VGLL4Q14135 290 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 VITQ6UXI7 678 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 OR4Q3Q8NH05 313 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 PAQR8Q8TEZ7 354 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 C4AP0C0L4 1744 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 C4BP0C0L5 1744 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 MAS1P04201 325 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 BMP1P13497 986 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 ACVR1BP36896 505 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 OR1E2P47887 323 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 HTRA4P83105 476 aaPredicted RBP13.56□□□□□ -0.24
COL7A1-201ENST00000328333 APOFQ13790 326 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 C4orf17Q53FE4 359 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 ZMAT1Q5H9K5 638 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 TMEM225Q6GV28 225 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 C6orf120Q7Z4R8 191 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 ZNF679Q8IYX0 411 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 UHRF2Q96PU4 802 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 FAM162BQ5T6X4 162 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 GCDHQ92947 438 aaPredicted RBP13.56□□□□□ -0.24
COL7A1-201ENST00000328333 RADILQ96JH8 1075 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 PITHD1Q9GZP4 211 aaPredicted RBP13.56□□□□□ -0.24
COL7A1-201ENST00000328333 MED17Q9NVC6 651 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 DIRAS1O95057 198 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 CLCNKAP51800 687 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 SMPDL3BQ92485 455 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 ZDHHC12Q96GR4 267 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 MS4A4EQ96PG1 132 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 MICU1Q9BPX6 476 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 BAK1Q16611 211 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 C1orf87Q8N0U7 546 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 MYADMQ96S97 322 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 GORASP2Q9H8Y8 452 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 K7EPK0 472 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 IL4RP24394 825 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 ZNF74Q16587 644 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 FAM71E2Q8N5Q1 922 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms