RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 Q6ZSR9 355 aa8.81□□□□□ -1
VPS41-201ENST00000265745 KIF18BQ86Y91 864 aa8.81□□□□□ -1
VPS41-201ENST00000265745 C10orf107Q8IVU9 208 aa8.81□□□□□ -1
VPS41-201ENST00000265745 FADS6Q8N9I5 356 aa8.81□□□□□ -1
VPS41-201ENST00000265745 CCDC63Q8NA47 563 aa8.81□□□□□ -1
VPS41-201ENST00000265745 NINJ1Q92982 152 aa8.81□□□□□ -1
VPS41-201ENST00000265745 DTNBP1Q96EV8 351 aa8.81□□□□□ -1
VPS41-201ENST00000265745 SFXN2Q96NB2 322 aa8.81□□□□□ -1
VPS41-201ENST00000265745 TM9SF2Q99805 663 aa8.81□□□□□ -1
VPS41-201ENST00000265745 SFXN3Q9BWM7 321 aa8.81□□□□□ -1
VPS41-201ENST00000265745 CLEC4MQ9H2X3 399 aaPredicted RBP8.81□□□□□ -1
VPS41-201ENST00000265745 LIME1Q9H400 295 aa8.81□□□□□ -1
VPS41-201ENST00000265745 DSN1Q9H410 356 aa8.81□□□□□ -1
VPS41-201ENST00000265745 L2HGDHQ9H9P8 463 aa8.81□□□□□ -1
VPS41-201ENST00000265745 DDX18Q9NVP1 670 aaKnown RBP8.81□□□□□ -1
VPS41-201ENST00000265745 C1orf109Q9NX04 203 aa8.81□□□□□ -1
VPS41-201ENST00000265745 CLCF1Q9UBD9 225 aa8.81□□□□□ -1
VPS41-201ENST00000265745 CBLCQ9ULV8 474 aa8.81□□□□□ -1
VPS41-201ENST00000265745 PTGDR2Q9Y5Y4 395 aa8.81□□□□□ -1
VPS41-201ENST00000265745 CELSR1Q9NYQ6 3014 aa8.8□□□□□ -1
VPS41-201ENST00000265745 AKAP6Q13023 2319 aa8.8□□□□□ -1
VPS41-201ENST00000265745 ANKRD17O75179 2603 aaKnown RBP8.8□□□□□ -1
VPS41-201ENST00000265745 EEF1E1-BLOC1S5C9J1V9 151 aa8.8□□□□□ -1
VPS41-201ENST00000265745 SLC28A1O00337 649 aa8.8□□□□□ -1
VPS41-201ENST00000265745 AZIN1O14977 448 aa8.8□□□□□ -1
VPS41-201ENST00000265745 EEF1E1O43324 174 aaKnown RBP8.8□□□□□ -1
VPS41-201ENST00000265745 IL33O95760 270 aa8.8□□□□□ -1
VPS41-201ENST00000265745 IFI6P09912 130 aa8.8□□□□□ -1
VPS41-201ENST00000265745 DSCR4P56555 118 aaPredicted RBP8.8□□□□□ -1
VPS41-201ENST00000265745 SORDQ00796 357 aa8.8□□□□□ -1
VPS41-201ENST00000265745 DECR1Q16698 335 aa8.8□□□□□ -1
VPS41-201ENST00000265745 SH2D4BQ5SQS7 431 aa8.8□□□□□ -1
VPS41-201ENST00000265745 RNF165Q6ZSG1 346 aa8.8□□□□□ -1
VPS41-201ENST00000265745 ZNF551Q7Z340 670 aaPredicted RBP8.8□□□□□ -1
VPS41-201ENST00000265745 CDC20BQ86Y33 519 aa8.8□□□□□ -1
VPS41-201ENST00000265745 C4orf33Q8N1A6 199 aa8.8□□□□□ -1
VPS41-201ENST00000265745 OR2M3Q8NG83 312 aa8.8□□□□□ -1
VPS41-201ENST00000265745 OR4K17Q8NGC6 315 aa8.8□□□□□ -1
VPS41-201ENST00000265745 OR2T11Q8NH01 316 aa8.8□□□□□ -1
VPS41-201ENST00000265745 LINC01560Q8TB33 94 aa8.8□□□□□ -1
VPS41-201ENST00000265745 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.8□□□□□ -16e-6■■■■■ 28.1
VPS41-201ENST00000265745 HOXB13Q92826 284 aaPredicted RBP8.8□□□□□ -1
VPS41-201ENST00000265745 INTS12Q96CB8 462 aaKnown RBP8.8□□□□□ -1
VPS41-201ENST00000265745 ZNF764Q96H86 408 aaPredicted RBP8.8□□□□□ -1
VPS41-201ENST00000265745 LMF2Q9BU23 707 aaKnown RBP8.8□□□□□ -1
VPS41-201ENST00000265745 TRMOQ9BU70 441 aa8.8□□□□□ -1
VPS41-201ENST00000265745 GATA5Q9BWX5 397 aaPredicted RBP8.8□□□□□ -1
VPS41-201ENST00000265745 RTN4RQ9BZR6 473 aa8.8□□□□□ -1
VPS41-201ENST00000265745 CXXC4Q9H2H0 198 aa8.8□□□□□ -1
VPS41-201ENST00000265745 TUBB1Q9H4B7 451 aa8.8□□□□□ -1
VPS41-201ENST00000265745 LRTM1Q9HBL6 345 aa8.8□□□□□ -1
VPS41-201ENST00000265745 Q9N2J8 555 aa8.8□□□□□ -1
VPS41-201ENST00000265745 SDHAF3Q9NRP4 125 aa8.8□□□□□ -1
VPS41-201ENST00000265745 CCM2LQ9NUG4 571 aaPredicted RBP8.8□□□□□ -1
VPS41-201ENST00000265745 FAM120CQ9NX05 1096 aaKnown RBP8.8□□□□□ -1
VPS41-201ENST00000265745 FLRT3Q9NZU0 649 aa8.8□□□□□ -1
VPS41-201ENST00000265745 MED11Q9P086 117 aa8.8□□□□□ -1
VPS41-201ENST00000265745 ST6GALNAC2Q9UJ37 374 aa8.8□□□□□ -1
VPS41-201ENST00000265745 DKKL1Q9UK85 242 aa8.8□□□□□ -1
VPS41-201ENST00000265745 ABCG2Q9UNQ0 655 aa8.8□□□□□ -1
VPS41-201ENST00000265745 RPH3AQ9Y2J0 694 aaPredicted RBP8.8□□□□□ -1
VPS41-201ENST00000265745 PHF3Q92576 2039 aaKnown RBP8.8□□□□□ -1
VPS41-201ENST00000265745 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.79□□□□□ -1
VPS41-201ENST00000265745 TTC36A6NLP5 189 aa8.79□□□□□ -1
VPS41-201ENST00000265745 A8MXE2 369 aa8.79□□□□□ -1
VPS41-201ENST00000265745 RGS14O43566 566 aa8.79□□□□□ -1
VPS41-201ENST00000265745 HCRTR2O43614 444 aa8.79□□□□□ -1
VPS41-201ENST00000265745 SCO2O43819 266 aa8.79□□□□□ -1
VPS41-201ENST00000265745 TBX19O60806 448 aa8.79□□□□□ -1
VPS41-201ENST00000265745 TRIM13O60858 407 aa8.79□□□□□ -1
VPS41-201ENST00000265745 TNFSF13O75888 250 aa8.79□□□□□ -1
VPS41-201ENST00000265745 TGM6O95932 706 aa8.79□□□□□ -1
VPS41-201ENST00000265745 FGF4P08620 206 aa8.79□□□□□ -1
VPS41-201ENST00000265745 LINC00032P0C843 101 aa8.79□□□□□ -1
VPS41-201ENST00000265745 TCEA1P23193 301 aaKnown RBP8.79□□□□□ -1
VPS41-201ENST00000265745 GABRA3P34903 492 aa8.79□□□□□ -1
VPS41-201ENST00000265745 MAP3K8P41279 467 aa8.79□□□□□ -1
VPS41-201ENST00000265745 CLDN15P56746 228 aa8.79□□□□□ -1
VPS41-201ENST00000265745 RIPPLY3P57055 190 aa8.79□□□□□ -1
VPS41-201ENST00000265745 EEF1A1P68104 462 aaKnown RBP8.79□□□□□ -1
VPS41-201ENST00000265745 PCLAFQ15004 111 aa8.79□□□□□ -1
VPS41-201ENST00000265745 ZNHIT3Q15649 155 aaPredicted RBP8.79□□□□□ -1
VPS41-201ENST00000265745 UGT3A2Q3SY77 523 aa8.79□□□□□ -1
VPS41-201ENST00000265745 RFTN2Q52LD8 501 aaPredicted RBP8.79□□□□□ -1
VPS41-201ENST00000265745 EEF1A1P5Q5VTE0 462 aa8.79□□□□□ -1
VPS41-201ENST00000265745 KANK2Q63ZY3 851 aa8.79□□□□□ -1
VPS41-201ENST00000265745 APOOLQ6UXV4 268 aa8.79□□□□□ -1
VPS41-201ENST00000265745 MARCH3Q86UD3 253 aa8.79□□□□□ -1
VPS41-201ENST00000265745 GCNT2Q8N0V5 402 aa8.79□□□□□ -1
VPS41-201ENST00000265745 BANPQ8N9N5 519 aa8.79□□□□□ -1
VPS41-201ENST00000265745 GOT1L1Q8NHS2 421 aaPredicted RBP8.79□□□□□ -1
VPS41-201ENST00000265745 DUSP19Q8WTR2 217 aa8.79□□□□□ -1
VPS41-201ENST00000265745 GFM2Q969S9 779 aaKnown RBP8.79□□□□□ -1
VPS41-201ENST00000265745 FCRL1Q96LA6 429 aa8.79□□□□□ -1
VPS41-201ENST00000265745 CCT7Q99832 543 aa8.79□□□□□ -1
VPS41-201ENST00000265745 FOXC2Q99958 501 aa8.79□□□□□ -1
VPS41-201ENST00000265745 RBM24Q9BX46 236 aaKnown RBP8.79□□□□□ -1
VPS41-201ENST00000265745 PIGMQ9H3S5 423 aa8.79□□□□□ -1
VPS41-201ENST00000265745 REEP4Q9H6H4 257 aa8.79□□□□□ -1
VPS41-201ENST00000265745 NTMQ9P121 344 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms