RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 THEM6Q8WUY1 208 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 NR4A3Q92570 626 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 MVB12AQ96EY5 273 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 ECM29Q5VYK3 1845 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 CCDC168Q8NDH2 2452 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 L7N2F9 121 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF432O94892 652 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 IFNA1P01562 189 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 LCATP04180 440 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 FKBP2P26885 142 aaKnown RBP4.74□□□□□ -1.65
SCN1A-218ENST00000640036 VAMP2P63027 116 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 CFHR1Q03591 330 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF528Q3MIS6 628 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF101Q8IZC7 436 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF676Q8N7Q3 588 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 OR5AR1Q8NGP9 310 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 OR2A12Q8NGT7 310 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 OR5P2Q8WZ92 322 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 SHISA4Q96DD7 197 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 COL25A1Q9BXS0 654 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-218ENST00000640036 HEY2Q9UBP5 337 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 PCDHGB6Q9Y5F9 930 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 PLXNB2O15031 1838 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 ANKRD31Q8N7Z5 1873 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 CLCA1A8K7I4 914 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 NUDT19A8MXV4 375 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 SLC30A4O14863 429 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 GPIP06744 558 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 SPARCP09486 303 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 ENPP1P22413 925 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 GABRA2P47869 451 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 POLR2HP52434 150 aaKnown RBP4.74□□□□□ -1.65
SCN1A-218ENST00000640036 SLC36A2Q495M3 483 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 B3GNT6Q6ZMB0 384 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 AAED1Q7RTV5 226 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 GALNTL5Q7Z4T8 443 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 CUZD1Q86UP6 607 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 TWIST2Q8WVJ9 160 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 IMP4Q96G21 291 aaKnown RBP4.74□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF845Q96IR2 970 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-218ENST00000640036 ADOQ96SZ5 270 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 HBEGFQ99075 208 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 POLDIP3Q9BY77 421 aaKnown RBP4.74□□□□□ -1.65
SCN1A-218ENST00000640036 PELI2Q9HAT8 420 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF639Q9UID6 485 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 SNX13Q9Y5W8 968 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 OR6C65A6NJZ3 312 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 H0YGG7 62 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 J3QR89 54 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 PSMD9O00233 223 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 AIREO43918 545 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 EIF1BO60739 113 aaKnown RBP4.74□□□□□ -1.65
SCN1A-218ENST00000640036 SERPINA6P08185 405 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 EBLN1P0CF75 366 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 OR3A3P47888 321 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 OR3A2P47893 321 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 OR8B8Q15620 311 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 SLX4IPQ5VYV7 408 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 JMJD6Q6NYC1 403 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF786Q8N393 782 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 GALNT16Q8N428 558 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 LINC00471Q8N535 108 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 TET1Q8NFU7 2136 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 OR2L3Q8NG85 312 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 OR7A2PQ8NGA2 310 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 OR1E3Q8WZA6 343 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 H1FXQ92522 213 aaKnown RBP4.74□□□□□ -1.65
SCN1A-218ENST00000640036 KISS1RQ969F8 398 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-218ENST00000640036 BORCS5Q969J3 196 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 FGGYQ96C11 551 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 GNRHR2Q96P88 292 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 UBL7Q96S82 380 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-218ENST00000640036 TM9SF2Q99805 663 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 TMEM45AQ9NWC5 275 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 TAS2R7Q9NYW3 318 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 EBF1Q9UH73 591 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 IL20RAQ9UHF4 553 aa4.74□□□□□ -1.65
SCN1A-218ENST00000640036 J3QKU1 62 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 M0R2N6 131 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 ABCD4O14678 606 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 UNC5CO95185 931 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 H2BFMP0C1H6 154 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 UGT2B7P16662 529 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 GADD45AP24522 165 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 GAB1Q13480 694 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 RIPK1Q13546 671 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 HES1Q14469 280 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 ZXDCQ2QGD7 858 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 HBMQ6B0K9 141 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 C3orf58Q8NDZ4 430 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 TNFAIP8L1Q8WVP5 186 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 EXTL1Q92935 676 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 KLHL15Q96M94 604 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 FCRL4Q96PJ5 515 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 RPP25Q9BUL9 199 aaKnown RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 PITHD1Q9GZP4 211 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 TRPV5Q9NQA5 729 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 PRDM9Q9NQV7 894 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 PAK1IP1Q9NWT1 392 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 P4HTMQ9NXG6 502 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 124.7 ms