RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 DCAF7P61962 342 aa17.24■□□□□ 0.35
CDX1-202ENST00000616154 PLCXD2Q0VAA5 305 aa17.24■□□□□ 0.35
CDX1-202ENST00000616154 RCAN2Q14206 197 aa17.24■□□□□ 0.35
CDX1-202ENST00000616154 EXOSC7Q15024 291 aaKnown RBP17.24■□□□□ 0.35
CDX1-202ENST00000616154 PAMR1Q6UXH9 720 aa17.24■□□□□ 0.35
CDX1-202ENST00000616154 IKBIPQ70UQ0 350 aa17.24■□□□□ 0.35
CDX1-202ENST00000616154 MTERF4Q7Z6M4 381 aaKnown RBP17.24■□□□□ 0.35
CDX1-202ENST00000616154 TRIM42Q8IWZ5 723 aa17.24■□□□□ 0.35
CDX1-202ENST00000616154 ZNF764Q96H86 408 aaPredicted RBP17.24■□□□□ 0.35
CDX1-202ENST00000616154 NODALQ96S42 347 aa17.24■□□□□ 0.35
CDX1-202ENST00000616154 SLC35C2Q9NQQ7 365 aa17.24■□□□□ 0.35
CDX1-202ENST00000616154 PRODH2Q9UF12 536 aa17.24■□□□□ 0.35
CDX1-202ENST00000616154 BCAP29Q9UHQ4 241 aa17.24■□□□□ 0.35
CDX1-202ENST00000616154 WDR91A4D1P6 747 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 AZIN1O14977 448 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 PLOD3O60568 738 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 ICOSLGO75144 302 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 SNNO75324 88 aaPredicted RBP17.23■□□□□ 0.35
CDX1-202ENST00000616154 BCAS2O75934 225 aaPredicted RBP17.23■□□□□ 0.35
CDX1-202ENST00000616154 SLITRK5O94991 958 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 EPXP11678 715 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 CYP4B1P13584 511 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 CPN1P15169 458 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 PCSK2P16519 638 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 BGNP21810 368 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 ARRB2P32121 409 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 LTB4RQ15722 352 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 CHI3L2Q15782 390 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 IMPG1Q17R60 797 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 TRMT12Q53H54 448 aaKnown RBP17.23■□□□□ 0.35
CDX1-202ENST00000616154 SPDYAQ5MJ70 313 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 KANK2Q63ZY3 851 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 DESI1Q6ICB0 168 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 CAMKMTQ7Z624 323 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 YRDCQ86U90 279 aaKnown RBP17.23■□□□□ 0.35
CDX1-202ENST00000616154 C9orf106Q8NAJ2 232 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 SIMC1Q8NDZ2 872 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 ADCY4Q8NFM4 1077 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 ZNF75CPQ92670 426 aaPredicted RBP17.23■□□□□ 0.35
CDX1-202ENST00000616154 MAGEB18Q96M61 343 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 BTBD9Q96Q07 612 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 PAIP2Q9BPZ3 127 aaKnown RBP17.23■□□□□ 0.35
CDX1-202ENST00000616154 EBPLQ9BY08 206 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 OR2B2Q9GZK3 357 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 KLRF1Q9NZS2 232 aa17.23■□□□□ 0.35
CDX1-202ENST00000616154 EXO1Q9UQ84 846 aaKnown RBP17.23■□□□□ 0.35
CDX1-202ENST00000616154 MYO1GB0I1T2 1018 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 TMEM114B3SHH9 223 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 EEF1E1-BLOC1S5C9J1V9 151 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 SLC28A1O00337 649 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 EEF1E1O43324 174 aaKnown RBP17.22■□□□□ 0.35
CDX1-202ENST00000616154 UGT2B11O75310 529 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 CRCPO75575 148 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 GOSR1O95249 250 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 IFI6P09912 130 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 NEFHP12036 1026 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 DRD5P21918 477 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 PPICP45877 212 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 AGFG1P52594 562 aaKnown RBP17.22■□□□□ 0.35
CDX1-202ENST00000616154 DGKQP52824 942 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 PSPHP78330 225 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 CLEC6AQ6EIG7 209 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 NOXRED1Q6NXP6 359 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 FAM180BQ6P0A1 224 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 Q6ZSR9 355 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 ZCCHC23Q6ZST2 131 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 CCDC116Q8IYX3 515 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 OR52R1Q8NGF1 315 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 ZFP3Q96NJ6 502 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 TUBB1Q9H4B7 451 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 GALNT9Q9HCQ5 603 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 SERHLQ9NQF3 203 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 GIMAP4Q9NUV9 329 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 HAO1Q9UJM8 370 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 MAPRE3Q9UPY8 281 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 GPR55Q9Y2T6 319 aaPredicted RBP17.22■□□□□ 0.35
CDX1-202ENST00000616154 DNAJC15Q9Y5T4 150 aa17.22■□□□□ 0.35
CDX1-202ENST00000616154 PRAMEF25A6NGN4 478 aa17.21■□□□□ 0.35
CDX1-202ENST00000616154 FRG2CA6NGY1 282 aa17.21■□□□□ 0.35
CDX1-202ENST00000616154 CBR3O75828 277 aa17.21■□□□□ 0.35
CDX1-202ENST00000616154 SNUPNO95149 360 aaKnown RBP17.21■□□□□ 0.35
CDX1-202ENST00000616154 TMIGD3P0DMS9 266 aaPredicted RBP17.21■□□□□ 0.35
CDX1-202ENST00000616154 MRPS35P82673 323 aaKnown RBP17.21■□□□□ 0.35
CDX1-202ENST00000616154 GUCY1A3Q02108 690 aa17.21■□□□□ 0.35
CDX1-202ENST00000616154 BTKQ06187 659 aa17.21■□□□□ 0.35
CDX1-202ENST00000616154 BST1Q10588 318 aa17.21■□□□□ 0.35
CDX1-202ENST00000616154 FOXD4Q12950 439 aaPredicted RBP17.21■□□□□ 0.35
CDX1-202ENST00000616154 UGT3A2Q3SY77 523 aa17.21■□□□□ 0.35
CDX1-202ENST00000616154 ADGRE4PQ86SQ3 457 aa17.21■□□□□ 0.35
CDX1-202ENST00000616154 WDSUB1Q8N9V3 476 aa17.21■□□□□ 0.35
CDX1-202ENST00000616154 OR9A2Q8NGT5 310 aa17.21■□□□□ 0.35
CDX1-202ENST00000616154 LINC01560Q8TB33 94 aa17.21■□□□□ 0.35
CDX1-202ENST00000616154 EXOSC8Q96B26 276 aaKnown RBP17.21■□□□□ 0.35
CDX1-202ENST00000616154 VSTM2LQ96N03 204 aa17.21■□□□□ 0.35
CDX1-202ENST00000616154 TUBA1CQ9BQE3 449 aa17.21■□□□□ 0.35
CDX1-202ENST00000616154 SFXN3Q9BWM7 321 aa17.21■□□□□ 0.35
CDX1-202ENST00000616154 MANSC1Q9H8J5 431 aa17.21■□□□□ 0.35
CDX1-202ENST00000616154 DLL4Q9NR61 685 aa17.21■□□□□ 0.35
CDX1-202ENST00000616154 C1orf109Q9NX04 203 aa17.21■□□□□ 0.35
CDX1-202ENST00000616154 A0A087WV62 115 aa17.21■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 142.1 ms