RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 ERCC6LQ2NKX8 1250 aa13.35□□□□□ -0.27
PNKP-202ENST00000593706 TRMT12Q53H54 448 aaKnown RBP13.35□□□□□ -0.27
PNKP-202ENST00000593706 CHMP1BQ7LBR1 199 aa13.35□□□□□ -0.27
PNKP-202ENST00000593706 TRABD2AQ86V40 505 aa13.35□□□□□ -0.27
PNKP-202ENST00000593706 UBQLNLQ8IYU4 475 aa13.35□□□□□ -0.27
PNKP-202ENST00000593706 C4orf33Q8N1A6 199 aa13.35□□□□□ -0.27
PNKP-202ENST00000593706 CCNYL1Q8N7R7 359 aa13.35□□□□□ -0.27
PNKP-202ENST00000593706 ZNF681Q96N22 645 aa13.35□□□□□ -0.27
PNKP-202ENST00000593706 FAM111AQ96PZ2 611 aa13.35□□□□□ -0.27
PNKP-202ENST00000593706 UCN2Q96RP3 112 aa13.35□□□□□ -0.27
PNKP-202ENST00000593706 ADOQ96SZ5 270 aa13.35□□□□□ -0.27
PNKP-202ENST00000593706 G6PC3Q9BUM1 346 aa13.35□□□□□ -0.27
PNKP-202ENST00000593706 NMRK1Q9NWW6 199 aa13.35□□□□□ -0.27
PNKP-202ENST00000593706 SIRT5Q9NXA8 310 aa13.35□□□□□ -0.27
PNKP-202ENST00000593706 C6orf203Q9P0P8 240 aaPredicted RBP13.35□□□□□ -0.27
PNKP-202ENST00000593706 HEY2Q9UBP5 337 aa13.35□□□□□ -0.27
PNKP-202ENST00000593706 MCM8Q9UJA3 840 aa13.35□□□□□ -0.27
PNKP-202ENST00000593706 FBXL2Q9UKC9 423 aa13.35□□□□□ -0.27
PNKP-202ENST00000593706 UTS2RQ9UKP6 389 aa13.35□□□□□ -0.27
PNKP-202ENST00000593706 GRID1Q9ULK0 1009 aa13.35□□□□□ -0.27
PNKP-202ENST00000593706 DLGAP4Q9Y2H0 992 aa13.35□□□□□ -0.27
PNKP-202ENST00000593706 TIMM22Q9Y584 194 aa13.35□□□□□ -0.27
PNKP-202ENST00000593706 CSPG4Q6UVK1 2322 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 A0A1W2PNV4 684 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 MSTNO14793 375 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 CPA3P15088 417 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 ZNF708P17019 499 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 CLDN18P56856 261 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 NAA20P61599 178 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 EFR3AQ14156 821 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 PCLAFQ15004 111 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 OR5M10Q6IEU7 315 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 OR2A2Q6IF42 318 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 EMBQ6PCB8 327 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 CXorf67Q86X51 503 aaPredicted RBP13.34□□□□□ -0.27
PNKP-202ENST00000593706 RIBC1Q8N443 379 aaPredicted RBP13.34□□□□□ -0.27
PNKP-202ENST00000593706 BANPQ8N9N5 519 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 OR4K17Q8NGC6 315 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 NUDT8Q8WV74 236 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 CTHRC1Q96CG8 243 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 CNRIP1Q96F85 164 aaPredicted RBP13.34□□□□□ -0.27
PNKP-202ENST00000593706 APIPQ96GX9 242 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 APOPT1Q96IL0 206 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 MED18Q9BUE0 208 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 UBTD1Q9HAC8 227 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 MID1IP1Q9NPA3 183 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 KLHL28Q9NXS3 571 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 ZNF226Q9NYT6 803 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 SENP1Q9P0U3 644 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 CCL27Q9Y4X3 112 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 FBN3Q75N90 2809 aa13.34□□□□□ -0.27
PNKP-202ENST00000593706 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 SLC22A20A6NK97 555 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 COPEO14579 308 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 TO15178 435 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 PCDH7O60245 1069 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 TNFSF13O75888 250 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 BCAS2O75934 225 aaPredicted RBP13.33□□□□□ -0.28
PNKP-202ENST00000593706 SLU7O95391 586 aaKnown RBP13.33□□□□□ -0.28
PNKP-202ENST00000593706 TGM6O95932 706 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 GRK2P25098 689 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 DPP4P27487 766 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 HMOX2P30519 316 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 TIA1P31483 386 aaKnown RBP eCLIP13.33□□□□□ -0.28
PNKP-202ENST00000593706 CORO7P57737 925 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 SPIN4Q56A73 249 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 LARP4Q71RC2 724 aaKnown RBP eCLIP13.33□□□□□ -0.28
PNKP-202ENST00000593706 TRIM46Q7Z4K8 759 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 MREGQ8N565 214 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.33□□□□□ -0.28
PNKP-202ENST00000593706 ZNF675Q8TD23 568 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 PIGTQ969N2 578 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 PIK3IP1Q96FE7 263 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 SLC35A4Q96G79 324 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 BTBD9Q96Q07 612 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 CCL19Q99731 98 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 ANKRA2Q9H9E1 313 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 GIMAP4Q9NUV9 329 aa13.33□□□□□ -0.28
PNKP-202ENST00000593706 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.33□□□□□ -0.28
PNKP-202ENST00000593706 GPR55Q9Y2T6 319 aaPredicted RBP13.33□□□□□ -0.28
PNKP-202ENST00000593706 V9GYY5 206 aaPredicted RBP13.33□□□□□ -0.28
PNKP-202ENST00000593706 CHD3Q12873 2000 aaKnown RBP13.32□□□□□ -0.28
PNKP-202ENST00000593706 GNG14A0A1W2PPG7 69 aa13.32□□□□□ -0.28
PNKP-202ENST00000593706 H3BQF6 201 aa13.32□□□□□ -0.28
PNKP-202ENST00000593706 H7C1Q1 480 aa13.32□□□□□ -0.28
PNKP-202ENST00000593706 CTIFO43310 598 aaKnown RBP13.32□□□□□ -0.28
PNKP-202ENST00000593706 HCRTR2O43614 444 aa13.32□□□□□ -0.28
PNKP-202ENST00000593706 CRHP06850 196 aa13.32□□□□□ -0.28
PNKP-202ENST00000593706 IL3P08700 152 aa13.32□□□□□ -0.28
PNKP-202ENST00000593706 FPR1P21462 350 aa13.32□□□□□ -0.28
PNKP-202ENST00000593706 KCNJ5P48544 419 aa13.32□□□□□ -0.28
PNKP-202ENST00000593706 SIRPAP78324 504 aa13.32□□□□□ -0.28
PNKP-202ENST00000593706 PSPHP78330 225 aa13.32□□□□□ -0.28
PNKP-202ENST00000593706 MRPS22P82650 360 aaKnown RBP13.32□□□□□ -0.28
PNKP-202ENST00000593706 FAM27E3Q08E93 113 aa13.32□□□□□ -0.28
PNKP-202ENST00000593706 ZNF155Q12901 538 aaPredicted RBP13.32□□□□□ -0.28
PNKP-202ENST00000593706 ZNF628Q5EBL2 1059 aa13.32□□□□□ -0.28
PNKP-202ENST00000593706 RAET1LQ5VY80 246 aa13.32□□□□□ -0.28
PNKP-202ENST00000593706 LIPMQ5VYY2 423 aa13.32□□□□□ -0.28
PNKP-202ENST00000593706 VWA1Q6PCB0 445 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms