RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 ULK2Q8IYT8 1036 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 LRRC34Q8IZ02 419 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 ZNF781Q8N8C0 355 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 CDRT4Q8N9R6 151 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 NUP43Q8NFH3 380 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 LILRB4Q8NHJ6 448 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 MARVELD3Q96A59 401 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 EFHD2Q96C19 240 aaPredicted RBP13.53□□□□□ -0.24
SS18-212ENST00000579061 COQ8BQ96D53 544 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 SORT1Q99523 831 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 PRPF18Q99633 342 aaKnown RBP13.53□□□□□ -0.24
SS18-212ENST00000579061 TIMP4Q99727 224 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 C1orf50Q9BV19 199 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 OR2B2Q9GZK3 357 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 C20orf27Q9GZN8 174 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 PRDM14Q9GZV8 571 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 NOP53Q9NZM5 478 aaKnown RBP13.53□□□□□ -0.24
SS18-212ENST00000579061 ABCG2Q9UNQ0 655 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 MED12Q93074 2177 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 ADGRG4Q8IZF6 3080 aa13.53□□□□□ -0.24
SS18-212ENST00000579061 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 FADS1O60427 444 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 NKX2-2O95096 273 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 ACTL6AO96019 429 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 BMP7P18075 431 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 SRD5A2P31213 254 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 EVI2BP34910 448 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 PRR5P85299 388 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 PTGR1Q14914 329 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 EIPR1Q53HC9 387 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 WIPI1Q5MNZ9 446 aaPredicted RBP13.52□□□□□ -0.25
SS18-212ENST00000579061 CPTPQ5TA50 214 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 RIPPLY2Q5TAB7 128 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 HHATQ5VTY9 493 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 RIMKLAQ8IXN7 391 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 OR7A2PQ8NGA2 310 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 PSMA8Q8TAA3 256 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 ABTB1Q969K4 478 aaPredicted RBP13.52□□□□□ -0.25
SS18-212ENST00000579061 GIMAP5Q96F15 307 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 MS4A4EQ96PG1 132 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 ZNF395Q9H8N7 513 aaPredicted RBP13.52□□□□□ -0.25
SS18-212ENST00000579061 SERHLQ9NQF3 203 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 FAM120CQ9NX05 1096 aaKnown RBP13.52□□□□□ -0.25
SS18-212ENST00000579061 ALKBH4Q9NXW9 302 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 PCNX3Q9H6A9 2034 aa13.52□□□□□ -0.25
SS18-212ENST00000579061 A0A1W2PRB8 838 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 TMEM120BA0PK00 339 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 C2orf72A6NCS6 295 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 KCNH1O95259 989 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 LAMP1P11279 417 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 LCN1P31025 176 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 GABRA3P34903 492 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 ZFP36L2P47974 494 aaKnown RBP13.51□□□□□ -0.25
SS18-212ENST00000579061 CLK3P49761 638 aaKnown RBP13.51□□□□□ -0.25
SS18-212ENST00000579061 CLDN8P56748 225 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 WDR4P57081 412 aaKnown RBP13.51□□□□□ -0.25
SS18-212ENST00000579061 PDCD2Q16342 344 aaPredicted RBP13.51□□□□□ -0.25
SS18-212ENST00000579061 LSM12Q3MHD2 195 aaKnown RBP13.51□□□□□ -0.25
SS18-212ENST00000579061 EXOSC6Q5RKV6 272 aaKnown RBP13.51□□□□□ -0.25
SS18-212ENST00000579061 WDR53Q7Z5U6 358 aaPredicted RBP13.51□□□□□ -0.25
SS18-212ENST00000579061 CAMKMTQ7Z624 323 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 ACBD4Q8NC06 268 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 OR10Q1Q8NGQ4 319 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 GPR151Q8TDV0 419 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 OR5P2Q8WZ92 322 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 TLCD1Q96CP7 247 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 SPOCK3Q9BQ16 436 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 UGT2B28Q9BY64 529 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 BHLHE41Q9C0J9 482 aaPredicted RBP13.51□□□□□ -0.25
SS18-212ENST00000579061 ENKD1Q9H0I2 346 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 TMBIM4Q9HC24 238 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 HHATLQ9HCP6 504 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 KCNJ16Q9NPI9 418 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 EQTNQ9NQ60 294 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 SDHAF3Q9NRP4 125 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 SIRT3Q9NTG7 399 aaPredicted RBP13.51□□□□□ -0.25
SS18-212ENST00000579061 SLC6A5Q9Y345 797 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 TEX15Q9BXT5 2789 aa13.51□□□□□ -0.25
SS18-212ENST00000579061 SOX30O94993 753 aa13.5□□□□□ -0.25
SS18-212ENST00000579061 EPPINO95925 133 aa13.5□□□□□ -0.25
SS18-212ENST00000579061 G6PDP11413 515 aa13.5□□□□□ -0.25
SS18-212ENST00000579061 COX6B1P14854 86 aa13.5□□□□□ -0.25
SS18-212ENST00000579061 PRIM2P49643 509 aa13.5□□□□□ -0.25
SS18-212ENST00000579061 PRKAG1P54619 331 aa13.5□□□□□ -0.25
SS18-212ENST00000579061 BST1Q10588 318 aa13.5□□□□□ -0.25
SS18-212ENST00000579061 MFSD12Q6NUT3 480 aa13.5□□□□□ -0.25
SS18-212ENST00000579061 ENPP6Q6UWR7 440 aa13.5□□□□□ -0.25
SS18-212ENST00000579061 YRDCQ86U90 279 aaKnown RBP13.5□□□□□ -0.25
SS18-212ENST00000579061 CCDC71Q8IV32 467 aaPredicted RBP13.5□□□□□ -0.25
SS18-212ENST00000579061 KRTCAP2Q8N6L1 136 aa13.5□□□□□ -0.25
SS18-212ENST00000579061 ANKRD42Q8N9B4 389 aa13.5□□□□□ -0.25
SS18-212ENST00000579061 FADS6Q8N9I5 356 aa13.5□□□□□ -0.25
SS18-212ENST00000579061 RAB3IL1Q8TBN0 382 aa13.5□□□□□ -0.25
SS18-212ENST00000579061 FAM110BQ8TC76 370 aa13.5□□□□□ -0.25
SS18-212ENST00000579061 FAM120BQ96EK7 910 aaKnown RBP13.5□□□□□ -0.25
SS18-212ENST00000579061 WDYHV1Q96HA8 205 aa13.5□□□□□ -0.25
SS18-212ENST00000579061 DOCK7Q96N67 2140 aa13.5□□□□□ -0.25
SS18-212ENST00000579061 PAIP2Q9BPZ3 127 aaKnown RBP13.5□□□□□ -0.25
SS18-212ENST00000579061 TREX2Q9BQ50 279 aaPredicted RBP13.5□□□□□ -0.25
SS18-212ENST00000579061 AKTIPQ9H8T0 292 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms