RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 FESP07332 822 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 PABPC4LP0CB38 370 aaKnown RBP12.67□□□□□ -0.38
CCDC40-209ENST00000573474 ATP6V1C1P21283 382 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 SDHBP21912 280 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 MAGEA2P43356 314 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 PTDSS1P48651 473 aaKnown RBP12.67□□□□□ -0.38
CCDC40-209ENST00000573474 SLC26A5P58743 744 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 PSPHP78330 225 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 DNASE1L3Q13609 305 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 SSPNQ14714 243 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 PCOLCEQ15113 449 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 DECR1Q16698 335 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 DUSP7Q16829 419 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 RSPO4Q2I0M5 234 aaPredicted RBP12.67□□□□□ -0.38
CCDC40-209ENST00000573474 ZNF311Q5JNZ3 666 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 HMBOX1Q6NT76 420 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 FIGNL1Q6PIW4 674 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 DHRS4L2Q6PKH6 230 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 IGF2-ASQ6U949 168 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 HSDL2Q6YN16 418 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 PIWIL3Q7Z3Z3 882 aaKnown RBP12.67□□□□□ -0.38
CCDC40-209ENST00000573474 AMIGO2Q86SJ2 522 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 C9orf40Q8IXQ3 194 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 PEX5LQ8IYB4 626 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 ZSCAN1Q8NBB4 408 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 APCDD1LQ8NCL9 501 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 C17orf47Q8NEP4 570 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 OR4N2Q8NGD1 307 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 OR8K3Q8NH51 312 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 GEMIN6Q8WXD5 167 aaKnown RBP12.67□□□□□ -0.38
CCDC40-209ENST00000573474 PROX1Q92786 737 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 CENPNQ96H22 339 aaPredicted RBP12.67□□□□□ -0.38
CCDC40-209ENST00000573474 C7orf34Q96L11 122 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 PINK1Q9BXM7 581 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 NXF5Q9H1B4 397 aaKnown RBP12.67□□□□□ -0.38
CCDC40-209ENST00000573474 FBXO34Q9NWN3 711 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 DNAJB9Q9UBS3 223 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 MRTO4Q9UKD2 239 aaKnown RBP12.67□□□□□ -0.38
CCDC40-209ENST00000573474 HS3ST3B1Q9Y662 390 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 SPEGQ15772 3267 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 KNTC1P50748 2209 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 IGHV1-45A0A0A0MS14 117 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 A0A1W2PQ72 361 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 AGAP5A6NIR3 686 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 CDRT15L2A8MXV6 281 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.66□□□□□ -0.38
CCDC40-209ENST00000573474 TERTO14746 1132 aaKnown RBP12.66□□□□□ -0.38
CCDC40-209ENST00000573474 TO15178 435 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 ACOX3O15254 700 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 CST1P01037 141 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 DBIP07108 87 aaKnown RBP12.66□□□□□ -0.38
CCDC40-209ENST00000573474 PRKAR1BP31321 381 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 DLSTP36957 453 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 RNF4P78317 190 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 KCNC4Q03721 635 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 LARS2Q15031 903 aaKnown RBP12.66□□□□□ -0.38
CCDC40-209ENST00000573474 TRIP10Q15642 601 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 GPR68Q15743 365 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 EXT1Q16394 746 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 NNATQ16517 81 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.66□□□□□ -0.38
CCDC40-209ENST00000573474 NDUFAF7Q7L592 441 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 BCORP1Q8N888 145 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 ZNF441Q8N8Z8 693 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 GPR32P1Q8NGA4 272 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 OR5L2Q8NGL0 311 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 OR52P1PQ8NH57 321 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 NRG4Q8WWG1 115 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 TP53INP1Q96A56 240 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 NACC2Q96BF6 587 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 ZG16BQ96DA0 208 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 HSPBAP1Q96EW2 488 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 ZNF354BQ96LW1 612 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 GAL3ST4Q96RP7 486 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 BDH2Q9BUT1 245 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 SEMA6AQ9H2E6 1030 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 SH3GLB1Q9Y371 365 aa12.66□□□□□ -0.38
CCDC40-209ENST00000573474 TRBV11-1A0A0K0K1C0 115 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 SYT5O00445 386 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 SOCS6O14544 535 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 ZFAND5O76080 213 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 IL33O95760 270 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 LGI1O95970 557 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 IGKV1D-16P01601 117 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 THBS1P07996 1170 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 COX6A1P12074 109 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 ITGA2P17301 1181 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 RPS4Y1P22090 263 aaKnown RBP12.65□□□□□ -0.38
CCDC40-209ENST00000573474 LCN1P31025 176 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 VHLP40337 213 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 RFX3P48380 749 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 PSMD4P55036 377 aaKnown RBP12.65□□□□□ -0.38
CCDC40-209ENST00000573474 RPS18P62269 152 aaKnown RBP12.65□□□□□ -0.38
CCDC40-209ENST00000573474 VLDLRP98155 873 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 FLYWCH1Q4VC44 716 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 LIN52Q52LA3 116 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 OGFRL1Q5TC84 451 aaPredicted RBP12.65□□□□□ -0.38
CCDC40-209ENST00000573474 KIRREL2Q6UWL6 708 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 VRK2Q86Y07 508 aa12.65□□□□□ -0.38
CCDC40-209ENST00000573474 OR11G2Q8NGC1 345 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms