RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 SIMC1Q8NDZ2 872 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 CEP70Q8NHQ1 597 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 NEIL3Q8TAT5 605 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 RND1Q92730 232 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 HGDQ93099 445 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 TUBGCP3Q96CW5 907 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 ELP4Q96EB1 424 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 PGM2Q96G03 612 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 SLC35A4Q96G79 324 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 FCRL1Q96LA6 429 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 AMDHD1Q96NU7 426 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 NODALQ96S42 347 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 DMRTA2Q96SC8 542 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 ADOQ96SZ5 270 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 PRPF18Q99633 342 aaKnown RBP7.41□□□□□ -1.22
VPS53-214ENST00000572607 SLC6A15Q9H2J7 730 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 PROK2Q9HC23 129 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 PNPLA3Q9NST1 481 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 ATAD3AQ9NVI7 634 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 C19orf53Q9UNZ5 99 aaPredicted RBP7.41□□□□□ -1.22
VPS53-214ENST00000572607 MAPRE3Q9UPY8 281 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 C15orf41Q9Y2V0 281 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 SVILO95425 2214 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 UPK1AO00322 258 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 ICOSLGO75144 302 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 CBR3O75828 277 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 HPNP05981 417 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 CT45A8P0DMV1 189 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 CT45A9P0DMV2 189 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 BCKDHAP12694 445 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 GRNP28799 593 aaKnown RBP7.4□□□□□ -1.22
VPS53-214ENST00000572607 CHRNB4P30926 498 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 RFX3P48380 749 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 CDK9P50750 372 aaKnown RBP7.4□□□□□ -1.22
VPS53-214ENST00000572607 PNLIPRP2P54317 469 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 PRKAG1P54619 331 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 RIPPLY3P57055 190 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 CORO7P57737 925 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 ABCE1P61221 599 aaKnown RBP7.4□□□□□ -1.22
VPS53-214ENST00000572607 PRR5P85299 388 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 PMPCAQ10713 525 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 STX3Q13277 289 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 PDCD2Q16342 344 aaPredicted RBP7.4□□□□□ -1.22
VPS53-214ENST00000572607 ZNF630Q2M218 657 aaPredicted RBP7.4□□□□□ -1.22
VPS53-214ENST00000572607 UGT3A2Q3SY77 523 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 CYP27C1Q4G0S4 372 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 CT45A2Q5DJT8 189 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 XKR7Q5GH72 579 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 C6orf136Q5SQH8 315 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 C1orf185Q5T7R7 199 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 CPTPQ5TA50 214 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 IL23RQ5VWK5 629 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 NPSR1Q6W5P4 371 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 NCCRP1Q6ZVX7 275 aaPredicted RBP7.4□□□□□ -1.22
VPS53-214ENST00000572607 ZNF551Q7Z340 670 aaPredicted RBP7.4□□□□□ -1.22
VPS53-214ENST00000572607 PM20D2Q8IYS1 436 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 OR2L13Q8N349 312 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 ANKRD42Q8N9B4 389 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 OR10Q1Q8NGQ4 319 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 OR14L1PQ8NHC6 308 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 CIDECQ96AQ7 238 aaPredicted RBP7.4□□□□□ -1.22
VPS53-214ENST00000572607 EFHD2Q96C19 240 aaPredicted RBP7.4□□□□□ -1.22
VPS53-214ENST00000572607 EGLN2Q96KS0 407 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 GNRHR2Q96P88 292 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 LMF2Q9BU23 707 aaKnown RBP7.4□□□□□ -1.22
VPS53-214ENST00000572607 C1orf50Q9BV19 199 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 ANKRA2Q9H9E1 313 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 EQTNQ9NQ60 294 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 SDHAF3Q9NRP4 125 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 ACSS1Q9NUB1 689 aaPredicted RBP7.4□□□□□ -1.22
VPS53-214ENST00000572607 NKIRAS1Q9NYS0 192 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 SPRR3Q9UBC9 169 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 TNFRSF10DQ9UBN6 386 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 BAIAP2L1Q9UHR4 511 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 ZDHHC2Q9UIJ5 367 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 DKKL1Q9UK85 242 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 CBLCQ9ULV8 474 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 EXO1Q9UQ84 846 aaKnown RBP7.4□□□□□ -1.22
VPS53-214ENST00000572607 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.4□□□□□ -1.22
VPS53-214ENST00000572607 RAP2CQ9Y3L5 183 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 PCDHGB3Q9Y5G1 929 aa7.4□□□□□ -1.22
VPS53-214ENST00000572607 ITPR3Q14573 2671 aa7.4□□□□□ -1.23
VPS53-214ENST00000572607 A0A1W2PRB8 838 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 FAM90A27PA6NNH2 459 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 AHRRA9YTQ3 701 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 ADAM10O14672 748 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 SCAMP2O15127 329 aaKnown RBP7.39□□□□□ -1.23
VPS53-214ENST00000572607 EMC8O43402 210 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 TSPAN2O60636 221 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 NME6O75414 186 aaPredicted RBP7.39□□□□□ -1.23
VPS53-214ENST00000572607 PRPS1L1P21108 318 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 PTPN6P29350 595 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 GABRA3P34903 492 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 SOX18P35713 384 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 SLC1A6P48664 564 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 PRIM2P49643 509 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 RPL14P50914 215 aaKnown RBP7.39□□□□□ -1.23
VPS53-214ENST00000572607 NUP107P57740 925 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 PSG6Q00889 435 aa7.39□□□□□ -1.23
VPS53-214ENST00000572607 PDE7AQ13946 482 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms