RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 MEIOBQ8N635 442 aa14.79□□□□□ -0.04
CLN3-208ENST00000561505 METTL25Q8N6Q8 603 aa14.79□□□□□ -0.04
CLN3-208ENST00000561505 ZNF610Q8N9Z0 462 aa14.79□□□□□ -0.04
CLN3-208ENST00000561505 OR7G2Q8NG99 324 aa14.79□□□□□ -0.04
CLN3-208ENST00000561505 OR4N2Q8NGD1 307 aa14.79□□□□□ -0.04
CLN3-208ENST00000561505 OR9A2Q8NGT5 310 aa14.79□□□□□ -0.04
CLN3-208ENST00000561505 KAT2AQ92830 837 aa14.79□□□□□ -0.04
CLN3-208ENST00000561505 PIK3IP1Q96FE7 263 aa14.79□□□□□ -0.04
CLN3-208ENST00000561505 MED18Q9BUE0 208 aa14.79□□□□□ -0.04
CLN3-208ENST00000561505 RTN4RQ9BZR6 473 aa14.79□□□□□ -0.04
CLN3-208ENST00000561505 OPN3Q9H1Y3 402 aaPredicted RBP14.79□□□□□ -0.04
CLN3-208ENST00000561505 DSN1Q9H410 356 aa14.79□□□□□ -0.04
CLN3-208ENST00000561505 SLC35C2Q9NQQ7 365 aa14.79□□□□□ -0.04
CLN3-208ENST00000561505 PLSCR4Q9NRQ2 329 aa14.79□□□□□ -0.04
CLN3-208ENST00000561505 TAS2R9Q9NYW1 312 aa14.79□□□□□ -0.04
CLN3-208ENST00000561505 ZNF180Q9UJW8 692 aa14.79□□□□□ -0.04
CLN3-208ENST00000561505 ATRQ13535 2644 aa14.79□□□□□ -0.04
CLN3-208ENST00000561505 OR2M5A3KFT3 312 aa14.78□□□□□ -0.04
CLN3-208ENST00000561505 H0YC42 278 aa14.78□□□□□ -0.04
CLN3-208ENST00000561505 SMNDC1O75940 238 aaKnown RBP eCLIP14.78□□□□□ -0.04
CLN3-208ENST00000561505 SLITRK5O94991 958 aa14.78□□□□□ -0.04
CLN3-208ENST00000561505 THBDP07204 575 aa14.78□□□□□ -0.04
CLN3-208ENST00000561505 IL3P08700 152 aa14.78□□□□□ -0.04
CLN3-208ENST00000561505 IFI6P09912 130 aa14.78□□□□□ -0.04
CLN3-208ENST00000561505 POU2F1P14859 743 aa14.78□□□□□ -0.04
CLN3-208ENST00000561505 CHN1P15882 459 aa14.78□□□□□ -0.04
CLN3-208ENST00000561505 IL12BP29460 328 aa14.78□□□□□ -0.04
CLN3-208ENST00000561505 EVI2BP34910 448 aa14.78□□□□□ -0.04
CLN3-208ENST00000561505 KRT20P35900 424 aa14.78□□□□□ -0.04
CLN3-208ENST00000561505 ALDH9A1P49189 494 aa14.78□□□□□ -0.04
CLN3-208ENST00000561505 TPD52P55327 224 aaPredicted RBP14.78□□□□□ -0.04
CLN3-208ENST00000561505 CLCQ05315 142 aa14.78□□□□□ -0.04
CLN3-208ENST00000561505 CAPRIN1Q14444 709 aaKnown RBP14.78□□□□□ -0.04
CLN3-208ENST00000561505 ERCC6LQ2NKX8 1250 aa14.78□□□□□ -0.04
CLN3-208ENST00000561505 FAM219BQ5XKK7 198 aa14.78□□□□□ -0.04
CLN3-208ENST00000561505 SH2D5Q6ZV89 423 aa14.78□□□□□ -0.04
CLN3-208ENST00000561505 SLC44A2Q8IWA5 706 aaPredicted RBP14.78□□□□□ -0.04
CLN3-208ENST00000561505 SPATA3Q8NHX4 192 aa14.78□□□□□ -0.04
CLN3-208ENST00000561505 ZNF845Q96IR2 970 aaPredicted RBP14.78□□□□□ -0.04
CLN3-208ENST00000561505 ZNF382Q96SR6 550 aa14.78□□□□□ -0.04
CLN3-208ENST00000561505 CCL19Q99731 98 aa14.78□□□□□ -0.04
CLN3-208ENST00000561505 C19orf53Q9UNZ5 99 aaPredicted RBP14.78□□□□□ -0.04
CLN3-208ENST00000561505 DSCAMO60469 2012 aa14.78□□□□□ -0.04
CLN3-208ENST00000561505 SOX30O94993 753 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 KRT6AP02538 564 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 KRT6BP04259 564 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 PPP3CBP16298 524 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 TSPAN8P19075 237 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 TBXA2RP21731 343 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 MPIP34949 423 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 KRT6CP48668 564 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 HEPACAMQ14CZ8 416 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 RASA2Q15283 850 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 UAP1Q16222 522 aaPredicted RBP14.77□□□□□ -0.05
CLN3-208ENST00000561505 PRSS53Q2L4Q9 553 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 UNC50Q53HI1 259 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 TCHHL1Q5QJ38 904 aaPredicted RBP14.77□□□□□ -0.05
CLN3-208ENST00000561505 FAM214BQ7L5A3 538 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 TAOK1Q7L7X3 1001 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 CHMP1BQ7LBR1 199 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 P4HA3Q7Z4N8 544 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 CNEP1R1Q8N9A8 125 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 OR4K17Q8NGC6 315 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 UHMK1Q8TAS1 419 aaKnown RBP14.77□□□□□ -0.05
CLN3-208ENST00000561505 FNDC9Q8TBE3 224 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 C16orf78Q8WTQ4 265 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 DCAKDQ8WVC6 231 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 HOXB13Q92826 284 aaPredicted RBP14.77□□□□□ -0.05
CLN3-208ENST00000561505 EFHD2Q96C19 240 aaPredicted RBP14.77□□□□□ -0.05
CLN3-208ENST00000561505 MTBPQ96DY7 904 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 C1GALT1C1Q96EU7 318 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 FAM111AQ96PZ2 611 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 HBEGFQ99075 208 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 TMEM204Q9BSN7 226 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 ACPTQ9BZG2 426 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 SDHAF3Q9NRP4 125 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 FAM120CQ9NX05 1096 aaKnown RBP14.77□□□□□ -0.05
CLN3-208ENST00000561505 PPP4R1LQ9P1A2 415 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 AP4B1Q9Y6B7 739 aa14.77□□□□□ -0.05
CLN3-208ENST00000561505 ROS1P08922 2347 aa14.76□□□□□ -0.05
CLN3-208ENST00000561505 ESYT3A0FGR9 886 aa14.76□□□□□ -0.05
CLN3-208ENST00000561505 TRIM64A6NGJ6 449 aa14.76□□□□□ -0.05
CLN3-208ENST00000561505 TRIM64BA6NI03 449 aa14.76□□□□□ -0.05
CLN3-208ENST00000561505 PCDH7O60245 1069 aa14.76□□□□□ -0.05
CLN3-208ENST00000561505 ULK1O75385 1050 aa14.76□□□□□ -0.05
CLN3-208ENST00000561505 HK1P19367 917 aa14.76□□□□□ -0.05
CLN3-208ENST00000561505 PTH2RP49190 550 aa14.76□□□□□ -0.05
CLN3-208ENST00000561505 CLDN20P56880 219 aa14.76□□□□□ -0.05
CLN3-208ENST00000561505 KRTAP1-1Q07627 177 aa14.76□□□□□ -0.05
CLN3-208ENST00000561505 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.76□□□□□ -0.05
CLN3-208ENST00000561505 SPIN4Q56A73 249 aa14.76□□□□□ -0.05
CLN3-208ENST00000561505 ZNF678Q5SXM1 525 aa14.76□□□□□ -0.05
CLN3-208ENST00000561505 ZNF550Q7Z398 422 aa14.76□□□□□ -0.05
CLN3-208ENST00000561505 GGNQ86UU5 652 aa14.76□□□□□ -0.05
CLN3-208ENST00000561505 FAM9CQ8IZT9 166 aa14.76□□□□□ -0.05
CLN3-208ENST00000561505 CDYL2Q8N8U2 506 aa14.76□□□□□ -0.05
CLN3-208ENST00000561505 EXOSC8Q96B26 276 aaKnown RBP14.76□□□□□ -0.05
CLN3-208ENST00000561505 PAFAH2Q99487 392 aa14.76□□□□□ -0.05
CLN3-208ENST00000561505 PIGQQ9BRB3 760 aa14.76□□□□□ -0.05
CLN3-208ENST00000561505 PINK1Q9BXM7 581 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms