RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 CASP12Q6UXS9 341 aa9.44□□□□□ -0.9
TMEM260-211ENST00000556648 CD300LDQ6UXZ3 194 aa9.44□□□□□ -0.9
TMEM260-211ENST00000556648 FAM92BQ6ZTR7 304 aa9.44□□□□□ -0.9
TMEM260-211ENST00000556648 ZNF367Q7RTV3 350 aa9.44□□□□□ -0.9
TMEM260-211ENST00000556648 CROCCP3Q8IVE0 287 aa9.44□□□□□ -0.9
TMEM260-211ENST00000556648 GALNT12Q8IXK2 581 aa9.44□□□□□ -0.9
TMEM260-211ENST00000556648 MFSD4AQ8N468 514 aa9.44□□□□□ -0.9
TMEM260-211ENST00000556648 TMCO5AQ8N6Q1 288 aa9.44□□□□□ -0.9
TMEM260-211ENST00000556648 C19orf47Q8N9M1 422 aaKnown RBP9.44□□□□□ -0.9
TMEM260-211ENST00000556648 B4GALNT2Q8NHY0 566 aa9.44□□□□□ -0.9
TMEM260-211ENST00000556648 TMEM255BQ8WV15 326 aa9.44□□□□□ -0.9
TMEM260-211ENST00000556648 ZHX1-C8orf76Q96EF9 292 aa9.44□□□□□ -0.9
TMEM260-211ENST00000556648 CENPOQ9BU64 300 aa9.44□□□□□ -0.9
TMEM260-211ENST00000556648 SEMA6CQ9H3T2 930 aa9.44□□□□□ -0.9
TMEM260-211ENST00000556648 CAPN10Q9HC96 672 aa9.44□□□□□ -0.9
TMEM260-211ENST00000556648 HCN3Q9P1Z3 774 aa9.44□□□□□ -0.9
TMEM260-211ENST00000556648 GPR52Q9Y2T5 361 aa9.44□□□□□ -0.9
TMEM260-211ENST00000556648 IFT52Q9Y366 437 aa9.44□□□□□ -0.9
TMEM260-211ENST00000556648 PRUNE2Q8WUY3 3088 aa9.44□□□□□ -0.9
TMEM260-211ENST00000556648 A0A0A6YYC8 382 aaPredicted RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 OR2W5A6NFC9 320 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 OR5K4A6NMS3 321 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 I3L1I5 382 aaPredicted RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 CSO75390 466 aaKnown RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 GPR75O95800 540 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 ATP1B1P05026 303 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 PIPP12273 146 aaPredicted RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 ZNF10P21506 573 aaPredicted RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 CDH3P22223 829 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 HTR2AP28223 471 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 SOX3P41225 446 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 CDK5Q00535 292 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 DGUOKQ16854 277 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 SYT14P1Q58G82 188 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 CLEC12AQ5QGZ9 265 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 DCST2Q5T1A1 773 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 ARMC6Q6NXE6 501 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 Q6ZNX1 250 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 OR6Q1Q8NGQ2 317 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 OR4Q3Q8NH05 313 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 GNPDA2Q8TDQ7 276 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 TRUB1Q8WWH5 349 aaKnown RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 ABTB1Q969K4 478 aaPredicted RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 SLC41A3Q96GZ6 507 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 ZNF582Q96NG8 517 aaPredicted RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 OPALINQ96PE5 141 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 CHCHD6Q9BRQ6 235 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 PHF7Q9BWX1 381 aaPredicted RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 FOXQ1Q9C009 403 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 ZNF350Q9GZX5 532 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 SLC2A4RGQ9NR83 387 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 LSM2Q9Y333 95 aaKnown RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 AGAP5A6NIR3 686 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 DUXAA6NLW8 204 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 HRKO00198 91 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 ARHGAP33O14559 1287 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 DSCR3O14972 297 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 CHST10O43529 356 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 CNOT3O75175 753 aaKnown RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 CDC123O75794 336 aaPredicted RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 UBXN7O94888 489 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 CBX7O95931 251 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 ALOX5P09917 674 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 GKN3PP0CG01 181 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 GNSP15586 552 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 FUT1P19526 365 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 RPS4Y1P22090 263 aaKnown RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 CALRP27797 417 aaKnown RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 GIPRP48546 466 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 RAB38P57729 211 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 RPS3AP61247 264 aaKnown RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 MAT1AQ00266 395 aaKnown RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 RELAQ04206 551 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 ZNF155Q12901 538 aaPredicted RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 FZD5Q13467 585 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 ERV3-1Q14264 604 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 OCLNQ16625 522 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 NDUFA9Q16795 377 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 CHRDL2Q6WN34 429 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 WDR88Q6ZMY6 472 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 ATCAYQ86WG3 371 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 MCATQ8IVS2 390 aaKnown RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 SAMD14Q8IZD0 417 aaPredicted RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 METTL27Q8N6F8 245 aaPredicted RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 OR52R1Q8NGF1 315 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 OR8J1Q8NGP2 316 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 C9orf43Q8TAL5 461 aaPredicted RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 LMX1AQ8TE12 382 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 CRELD1Q96HD1 420 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 MAP3K3Q99759 626 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 POLDIP3Q9BY77 421 aaKnown RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 SAP130Q9H0E3 1048 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 PIGUQ9H490 435 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 UBE2ZQ9H832 354 aaPredicted RBP9.43□□□□□ -0.9
TMEM260-211ENST00000556648 IL20RAQ9UHF4 553 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 SLC7A7Q9UM01 511 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 CLCA2Q9UQC9 943 aa9.43□□□□□ -0.9
TMEM260-211ENST00000556648 A0A1W2PR77 199 aa9.42□□□□□ -0.9
TMEM260-211ENST00000556648 CLDN25C9JDP6 229 aa9.42□□□□□ -0.9
TMEM260-211ENST00000556648 AP3D1O14617 1153 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms