RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 HSPB2A8KAH6 182 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 FADS1O60427 444 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 NME6O75414 186 aaPredicted RBP14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 NKX2-2O95096 273 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 NGFRP08138 427 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 CYP4B1P13584 511 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 BMP7P18075 431 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 SSTR2P30874 369 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 LCN1P31025 176 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 CEACAM8P31997 349 aaPredicted RBP14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 GFRA1P56159 465 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 HSPB3Q12988 150 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 MAD2L1Q13257 205 aaPredicted RBP14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 GAB1Q13480 694 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 HSPB2Q16082 182 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 EIPR1Q53HC9 387 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 CES4AQ5XG92 561 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 NSUN5P2Q63ZY6 315 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 SEM1Q6ZVN7 128 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 CAMKMTQ7Z624 323 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 CCDC71Q8IV32 467 aaPredicted RBP14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 FADS6Q8N9I5 356 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 ZPLD1Q8TCW7 415 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 ABTB1Q969K4 478 aaPredicted RBP14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 GFM2Q969S9 779 aaKnown RBP14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 CIDECQ96AQ7 238 aaPredicted RBP14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 GIMAP5Q96F15 307 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 WDYHV1Q96HA8 205 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 C3orf30Q96M34 536 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 UCN2Q96RP3 112 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 SLC24A3Q9HC58 644 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 SERHLQ9NQF3 203 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 NPDC1Q9NQX5 325 aaPredicted RBP14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 GIN1Q9NXP7 522 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 BAIAP2L1Q9UHR4 511 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 MAPRE3Q9UPY8 281 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 ARHGAP21Q5T5U3 1957 aa14.6□□□□□ -0.07
CCDC88C-209ENST00000554872 HCFC1P51610 2035 aa14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 IGLV3-32A0A0A0MS00 114 aa14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 MBD3L4A6NDZ8 208 aaPredicted RBP14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 MBD3L3A6NE82 208 aaPredicted RBP14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 MBD3L5A6NJ08 208 aaPredicted RBP14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 AKAP10O43572 662 aa14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 PEX11AO75192 247 aa14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 PRPS1L1P21108 318 aa14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 CHMP24386 653 aa14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 MANFP55145 182 aaKnown RBP14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 GANABQ14697 944 aaKnown RBP14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 WIPI1Q5MNZ9 446 aaPredicted RBP14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 CEP85LQ5SZL2 805 aa14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 ANKRD26P1Q6NSI1 321 aa14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 ENPP6Q6UWR7 440 aa14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 ADGRE4PQ86SQ3 457 aa14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 RIMKLAQ8IXN7 391 aa14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 ZNF295-AS1Q8N0V1 137 aa14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 CLHC1Q8NHS4 586 aa14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 MBD3L2Q8NHZ7 208 aaPredicted RBP14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 AGR3Q8TD06 166 aa14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 EFHD2Q96C19 240 aaPredicted RBP14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 COQ8BQ96D53 544 aa14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 CALHM2Q9HA72 323 aa14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 ATAD3AQ9NVI7 634 aa14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 SH3BP4Q9P0V3 963 aa14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 SLC6A5Q9Y345 797 aa14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 FREM3P0C091 2139 aa14.59□□□□□ -0.07
CCDC88C-209ENST00000554872 B4DXG7 233 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 EMC8O43402 210 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 SOX30O94993 753 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 KCNH1O95259 989 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 HSPA4LO95757 839 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 MYZAPP0CAP1 466 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 GPC1P35052 558 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 SLC18A1P54219 525 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 DSCR4P56555 118 aaPredicted RBP14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 ABCE1P61221 599 aaKnown RBP14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 PRR5P85299 388 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 EMX2Q04743 252 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 BCL2A1Q16548 175 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 FBXL19-AS1Q494R0 122 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 DCST1Q5T197 706 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 MFSD12Q6NUT3 480 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 AAGABQ6PD74 315 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 IFNEQ86WN2 208 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 FNDC5Q8NAU1 212 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 OR10Q1Q8NGQ4 319 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 PPP1R14CQ8TAE6 165 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 FAM110BQ8TC76 370 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 PKNOX2Q96KN3 472 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 NEUROD4Q9HD90 331 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 SDHAF3Q9NRP4 125 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 SIRT3Q9NTG7 399 aaPredicted RBP14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 TAS2R10Q9NYW0 307 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 ZNF629Q9UEG4 869 aaPredicted RBP14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 FBXL2Q9UKC9 423 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 RAP2CQ9Y3L5 183 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 PDZD2O15018 2839 aa14.58□□□□□ -0.08
CCDC88C-209ENST00000554872 NKX2-6A6NCS4 301 aa14.57□□□□□ -0.08
CCDC88C-209ENST00000554872 FAM90A27PA6NNH2 459 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms