RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 ZDHHC18Q9NUE0 388 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 DCAF16Q9NXF7 216 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 SMC3Q9UQE7 1217 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 ASB3Q9Y575 518 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 TCF20Q9UGU0 1960 aaKnown RBP4.13□□□□□ -1.75
SCFD1-209ENST00000553280 ZSCAN5CA6NGD5 496 aaPredicted RBP4.12□□□□□ -1.75
SCFD1-209ENST00000553280 SNNO75324 88 aaPredicted RBP4.12□□□□□ -1.75
SCFD1-209ENST00000553280 SURF6O75683 361 aaKnown RBP4.12□□□□□ -1.75
SCFD1-209ENST00000553280 HCKP08631 526 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 HNF1AP20823 631 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 PBLDP30039 288 aaPredicted RBP4.12□□□□□ -1.75
SCFD1-209ENST00000553280 SPRP35270 261 aaPredicted RBP4.12□□□□□ -1.75
SCFD1-209ENST00000553280 DHPSP49366 369 aaPredicted RBP4.12□□□□□ -1.75
SCFD1-209ENST00000553280 PRELPP51888 382 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 TTC23Q5W5X9 447 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 LANCL3Q6ZV70 420 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 CYS1Q717R9 158 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 ANKRD37Q7Z713 158 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 ZNF683Q8IZ20 524 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 ZNF491Q8N8L2 437 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 ANKFN1Q8N957 763 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 Q8NBF4 154 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 ZNF248Q8NDW4 579 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 BEST4Q8NFU0 473 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 LRRC15Q8TF66 581 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 EMG1Q92979 244 aaKnown RBP4.12□□□□□ -1.75
SCFD1-209ENST00000553280 DNAJA3Q96EY1 480 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 SLC45A3Q96JT2 553 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 TTYH2Q9BSA4 534 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 EDEM2Q9BV94 578 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 OCR1Q9BZK8 76 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 ELOVL3Q9HB03 270 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 ZNF446Q9NWS9 450 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 UTP6Q9NYH9 597 aaKnown RBP4.12□□□□□ -1.75
SCFD1-209ENST00000553280 RAI14Q9P0K7 980 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 GALPQ9UBC7 116 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 MLXQ9UH92 298 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 WDR45Q9Y484 360 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 CPQQ9Y646 472 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 SPACA6W5XKT8 324 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 WDR81Q562E7 1941 aa4.12□□□□□ -1.75
SCFD1-209ENST00000553280 A0A087WYN8 130 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 TRBV7-9A0A0J9YWB2 115 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 TEX48A0A1B0GUV7 120 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 C11orf98E9PRG8 122 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 UBXN8O00124 270 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 SOCS3O14543 225 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 PPIHO43447 177 aaKnown RBP4.11□□□□□ -1.75
SCFD1-209ENST00000553280 DCXO43602 365 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 RAMP1O60894 148 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 B3GAT3O94766 335 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 IGF1P05019 195 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 HSD17B1P14061 328 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 XRCC1P18887 633 aaPredicted RBP4.11□□□□□ -1.75
SCFD1-209ENST00000553280 UQCRC2P22695 453 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 BRCC3P46736 316 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 POU3F4P49335 361 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 CRIP2P52943 208 aaPredicted RBP4.11□□□□□ -1.75
SCFD1-209ENST00000553280 PLA2G16P53816 162 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 HILS1P60008 231 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 RPS6P62753 249 aaKnown RBP4.11□□□□□ -1.75
SCFD1-209ENST00000553280 CSTF1Q05048 431 aaKnown RBP4.11□□□□□ -1.75
SCFD1-209ENST00000553280 PDK3Q15120 406 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 SIX1Q15475 284 aaPredicted RBP4.11□□□□□ -1.75
SCFD1-209ENST00000553280 SYPL1Q16563 259 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 MAPK6Q16659 721 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 RNF130Q86XS8 419 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 PHC2Q8IXK0 858 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 CTNNBL1Q8WYA6 563 aaPredicted RBP4.11□□□□□ -1.75
SCFD1-209ENST00000553280 C18orf25Q96B23 403 aaPredicted RBP4.11□□□□□ -1.75
SCFD1-209ENST00000553280 TADA1Q96BN2 335 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 MOCOSQ96EN8 888 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 C11orf24Q96F05 449 aaPredicted RBP4.11□□□□□ -1.75
SCFD1-209ENST00000553280 SLC41A3Q96GZ6 507 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 POM121L2Q96KW2 1035 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 SECISBP2Q96T21 854 aaKnown RBP4.11□□□□□ -1.75
SCFD1-209ENST00000553280 ZBTB18Q99592 522 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 TCHPQ9BT92 498 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 NFKBIZQ9BYH8 718 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 TRIM9Q9C026 710 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 NUDT4Q9NZJ9 180 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 CYTH4Q9UIA0 394 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 GMPPBQ9Y5P6 360 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 METP08581 1390 aa4.11□□□□□ -1.75
SCFD1-209ENST00000553280 FAM74A7A6NL05 159 aa4.1□□□□□ -1.75
SCFD1-209ENST00000553280 ARHGEF9O43307 516 aa4.1□□□□□ -1.75
SCFD1-209ENST00000553280 STX11O75558 287 aa4.1□□□□□ -1.75
SCFD1-209ENST00000553280 POP4O95707 220 aaKnown RBP4.1□□□□□ -1.75
SCFD1-209ENST00000553280 JCHAINP01591 159 aa4.1□□□□□ -1.75
SCFD1-209ENST00000553280 TPM2P07951 284 aa4.1□□□□□ -1.75
SCFD1-209ENST00000553280 SNRPCP09234 159 aaKnown RBP4.1□□□□□ -1.75
SCFD1-209ENST00000553280 TPSB2P20231 275 aa4.1□□□□□ -1.75
SCFD1-209ENST00000553280 MFAP2P55001 183 aa4.1□□□□□ -1.75
SCFD1-209ENST00000553280 ZNF33BQ06732 778 aa4.1□□□□□ -1.75
SCFD1-209ENST00000553280 ATXN7L3Q14CW9 347 aaPredicted RBP4.1□□□□□ -1.75
SCFD1-209ENST00000553280 TPSAB1Q15661 275 aa4.1□□□□□ -1.75
SCFD1-209ENST00000553280 PCK2Q16822 640 aa4.1□□□□□ -1.75
SCFD1-209ENST00000553280 FAM74A3Q4VXF1 159 aa4.1□□□□□ -1.75
SCFD1-209ENST00000553280 CELF3Q5SZQ8 465 aaKnown RBP4.1□□□□□ -1.75
SCFD1-209ENST00000553280 FAM182AQ5T1J6 154 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms