RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 KIAA1161Q6NSJ0 714 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 ZNF322Q6U7Q0 402 aaPredicted RBP12.86□□□□□ -0.35
VPS33A-208ENST00000543633 ZNF620Q6ZNG0 422 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 GHDCQ8N2G8 530 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 OR5M3Q8NGP4 307 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 MARVELD3Q96A59 401 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 TCEAL4Q96EI5 215 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 SLC38A1Q9H2H9 487 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 FN3KQ9H479 309 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 CYSLTR2Q9NS75 346 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 ENTPD4Q9Y227 616 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 GPR52Q9Y2T5 361 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 CKAP5Q14008 2032 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 A0A0G2JMP0 313 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 FEZF1A0PJY2 475 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 J3QRE1 110 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 EMC8O43402 210 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 APOL3O95236 402 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 HMGN2P05204 90 aaKnown RBP12.86□□□□□ -0.35
VPS33A-208ENST00000543633 CELP19835 753 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 SLC6A1P30531 599 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 CA8P35219 290 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 TRIM23P36406 574 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 CD79BP40259 229 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 CAPZA2P47755 286 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 AVPR1BP47901 424 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 CAV3P56539 151 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 IKZF1Q13422 519 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 SLC9A5Q14940 896 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 ZIC1Q15915 447 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 BTBD16Q32M84 506 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 ZNF311Q5JNZ3 666 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 METRNLQ641Q3 311 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 LHFPL3Q86UP9 236 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 CADM2Q8N3J6 435 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 FAM109AQ8N4B1 249 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 OR4Q3Q8NH05 313 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 SENP5Q96HI0 755 aaPredicted RBP12.86□□□□□ -0.35
VPS33A-208ENST00000543633 TMED9Q9BVK6 235 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 RAB11FIP5Q9BXF6 653 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 PIGUQ9H490 435 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 INPP5EQ9NRR6 644 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 SEMA4GQ9NTN9 838 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 MCUBQ9NWR8 336 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 HCFC1R1Q9NWW0 138 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 STMN3Q9NZ72 180 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 WNT6Q9Y6F9 365 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 CLCA3PQ9Y6N3 262 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 SMIM30A4D0T7 59 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 LRIT2A6NDA9 550 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 WASHC1A8K0Z3 465 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 ISM1B1AKI9 464 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 GPR89AB7ZAQ6 455 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 H7BY64 318 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 GTPBP1O00178 669 aaKnown RBP12.85□□□□□ -0.35
VPS33A-208ENST00000543633 GPR89BP0CG08 455 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 TSFMP43897 325 aaKnown RBP12.85□□□□□ -0.35
VPS33A-208ENST00000543633 RFX3P48380 749 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 LSM11P83369 360 aaKnown RBP eCLIP12.85□□□□□ -0.35
VPS33A-208ENST00000543633 LASP1Q14847 261 aaKnown RBP12.85□□□□□ -0.35
VPS33A-208ENST00000543633 CEBPEQ15744 281 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 CDC73Q6P1J9 531 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 TMEM107Q6UX40 140 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 WASH2PQ6VEQ5 465 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 TMEM91Q6ZNR0 172 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 MBOAT2Q6ZWT7 520 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 C2orf73Q8N5S3 287 aaPredicted RBP12.85□□□□□ -0.35
VPS33A-208ENST00000543633 ZFP41Q8N8Y5 198 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 SPRYD4Q8WW59 207 aaPredicted RBP12.85□□□□□ -0.35
VPS33A-208ENST00000543633 SNAPC3Q92966 411 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 FAM46AQ96IP4 442 aaKnown RBP12.85□□□□□ -0.35
VPS33A-208ENST00000543633 PRAP1Q96NZ9 151 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 MKRN2Q9H000 416 aaKnown RBP12.85□□□□□ -0.35
VPS33A-208ENST00000543633 B3GNT2Q9NY97 397 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 NLGN3Q9NZ94 848 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 TNFRSF10DQ9UBN6 386 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 RNF215Q9Y6U7 377 aa12.85□□□□□ -0.35
VPS33A-208ENST00000543633 SHISA3A0PJX4 238 aa12.84□□□□□ -0.35
VPS33A-208ENST00000543633 C7orf66A4D0T2 115 aa12.84□□□□□ -0.35
VPS33A-208ENST00000543633 RNF13O43567 381 aa12.84□□□□□ -0.35
VPS33A-208ENST00000543633 GNSP15586 552 aa12.84□□□□□ -0.35
VPS33A-208ENST00000543633 CSNK2A2P19784 350 aaPredicted RBP12.84□□□□□ -0.35
VPS33A-208ENST00000543633 PSMB5P28074 263 aa12.84□□□□□ -0.35
VPS33A-208ENST00000543633 TALDO1P37837 337 aa12.84□□□□□ -0.35
VPS33A-208ENST00000543633 HNRNPA1L2Q32P51 320 aaKnown RBP12.84□□□□□ -0.35
VPS33A-208ENST00000543633 PLA1AQ53H76 456 aa12.84□□□□□ -0.35
VPS33A-208ENST00000543633 ZNF57Q68EA5 555 aaPredicted RBP12.84□□□□□ -0.35
VPS33A-208ENST00000543633 SDE2Q6IQ49 451 aa12.84□□□□□ -0.35
VPS33A-208ENST00000543633 ZNF793Q6ZN11 406 aa12.84□□□□□ -0.35
VPS33A-208ENST00000543633 SHFQ7M4L6 423 aa12.84□□□□□ -0.35
VPS33A-208ENST00000543633 TPRA1Q86W33 373 aa12.84□□□□□ -0.35
VPS33A-208ENST00000543633 UBE2J2Q8N2K1 259 aa12.84□□□□□ -0.35
VPS33A-208ENST00000543633 OR2T33Q8NG76 320 aa12.84□□□□□ -0.35
VPS33A-208ENST00000543633 OR4F15Q8NGB8 312 aa12.84□□□□□ -0.35
VPS33A-208ENST00000543633 BADQ92934 168 aa12.84□□□□□ -0.35
VPS33A-208ENST00000543633 RAB7BQ96AH8 199 aa12.84□□□□□ -0.35
VPS33A-208ENST00000543633 OR7D2Q96RA2 312 aa12.84□□□□□ -0.35
VPS33A-208ENST00000543633 DCLRE1CQ96SD1 692 aaKnown RBP12.84□□□□□ -0.35
VPS33A-208ENST00000543633 HDHD5Q9BXW7 423 aa12.84□□□□□ -0.35
VPS33A-208ENST00000543633 TBC1D17Q9HA65 648 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 135 ms