RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 FAM13CQ8NE31 585 aa15.76■□□□□ 0.11
LIG1-204ENST00000542460 CHDHQ8NE62 594 aaPredicted RBP15.76■□□□□ 0.11
LIG1-204ENST00000542460 TMEM125Q96AQ2 219 aa15.76■□□□□ 0.11
LIG1-204ENST00000542460 EFHD2Q96C19 240 aaPredicted RBP15.76■□□□□ 0.11
LIG1-204ENST00000542460 ADOQ96SZ5 270 aa15.76■□□□□ 0.11
LIG1-204ENST00000542460 GPATCH1Q9BRR8 931 aaKnown RBP15.76■□□□□ 0.11
LIG1-204ENST00000542460 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.76■□□□□ 0.11
LIG1-204ENST00000542460 ZNF71Q9NQZ8 489 aaPredicted RBP15.76■□□□□ 0.11
LIG1-204ENST00000542460 LIPT1Q9Y234 373 aa15.76■□□□□ 0.11
LIG1-204ENST00000542460 C15orf38-AP3S2A0A0A6YYH1 394 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 BMP2P12643 396 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 SLC6A2P23975 617 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 RFX3P48380 749 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 CD97P48960 835 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 FBXW4P57775 412 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 GABPB1Q06547 395 aaPredicted RBP15.75■□□□□ 0.11
LIG1-204ENST00000542460 EFR3AQ14156 821 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 SELPLGQ14242 412 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 ARHGAP11BQ3KRB8 267 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 GLIPR1L2Q4G1C9 344 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 FIGNL1Q6PIW4 674 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 ARPINQ7Z6K5 226 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 ZNF227Q86WZ6 799 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 MDS2Q8NDY4 140 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 CATSPER1Q8NEC5 780 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 OR5M3Q8NGP4 307 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 BBC3Q96PG8 261 aaPredicted RBP15.75■□□□□ 0.11
LIG1-204ENST00000542460 SIGLEC12Q96PQ1 595 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 SECISBP2Q96T21 854 aaKnown RBP15.75■□□□□ 0.11
LIG1-204ENST00000542460 SDF2Q99470 211 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 TRIM8Q9BZR9 551 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 SLC25A18Q9H1K4 315 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 KAT8Q9H7Z6 458 aaKnown RBP15.75■□□□□ 0.11
LIG1-204ENST00000542460 TIMMDC1Q9NPL8 285 aa15.75■□□□□ 0.11
LIG1-204ENST00000542460 TMEM247A6NEH6 219 aa15.74■□□□□ 0.11
LIG1-204ENST00000542460 EIF4E1BA6NMX2 242 aaKnown RBP15.74■□□□□ 0.11
LIG1-204ENST00000542460 UGT2B11O75310 529 aa15.74■□□□□ 0.11
LIG1-204ENST00000542460 TNFRSF21O75509 655 aa15.74■□□□□ 0.11
LIG1-204ENST00000542460 IGKV1D-16P01601 117 aa15.74■□□□□ 0.11
LIG1-204ENST00000542460 T-ENOLP0DO92 83 aa15.74■□□□□ 0.11
LIG1-204ENST00000542460 CD46P15529 392 aa15.74■□□□□ 0.11
LIG1-204ENST00000542460 LCN1P31025 176 aa15.74■□□□□ 0.11
LIG1-204ENST00000542460 RPP38P78345 283 aaKnown RBP15.74■□□□□ 0.11
LIG1-204ENST00000542460 RABL3Q5HYI8 236 aa15.74■□□□□ 0.11
LIG1-204ENST00000542460 CCNJQ5T5M9 372 aa15.74■□□□□ 0.11
LIG1-204ENST00000542460 SLC22A10Q63ZE4 541 aa15.74■□□□□ 0.11
LIG1-204ENST00000542460 C8orf82Q6P1X6 216 aaPredicted RBP15.74■□□□□ 0.11
LIG1-204ENST00000542460 MDGA2Q7Z553 956 aa15.74■□□□□ 0.11
LIG1-204ENST00000542460 OR10G3Q8NGC4 313 aa15.74■□□□□ 0.11
LIG1-204ENST00000542460 PAQR8Q8TEZ7 354 aa15.74■□□□□ 0.11
LIG1-204ENST00000542460 HGDQ93099 445 aa15.74■□□□□ 0.11
LIG1-204ENST00000542460 TMCO6Q96DC7 493 aa15.74■□□□□ 0.11
LIG1-204ENST00000542460 TRNT1Q96Q11 434 aaKnown RBP15.74■□□□□ 0.11
LIG1-204ENST00000542460 ECSITQ9BQ95 431 aa15.74■□□□□ 0.11
LIG1-204ENST00000542460 NDE1Q9NXR1 346 aa15.74■□□□□ 0.11
LIG1-204ENST00000542460 P2RX2Q9UBL9 471 aa15.74■□□□□ 0.11
LIG1-204ENST00000542460 CHCHD2Q9Y6H1 151 aaPredicted RBP15.74■□□□□ 0.11
LIG1-204ENST00000542460 TRAV17A0A0B4J275 112 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 HS6ST1O60243 411 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 STX11O75558 287 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 SLC25A12O75746 678 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 UBOX5O94941 541 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 GUSBP08236 651 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 TFPTP0C1Z6 253 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 ATP6V1C1P21283 382 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 MXRA7P84157 204 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 GNA13Q14344 377 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 PCSK4Q6UW60 755 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 Q6ZS92 163 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 GALNT10Q86SR1 603 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 C10orf111Q8N326 155 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 RBMXL3Q8N7X1 1067 aaKnown RBP15.73■□□□□ 0.11
LIG1-204ENST00000542460 PSD4Q8NDX1 1056 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 UBL7Q96S82 380 aaPredicted RBP15.73■□□□□ 0.11
LIG1-204ENST00000542460 SH2D2AQ9NP31 389 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 A4GALTQ9NPC4 353 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 FBXO34Q9NWN3 711 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 CNIH4Q9P003 139 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 AP3M1Q9Y2T2 418 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 L3MBTL1Q9Y468 752 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 CSAG2Q9Y5P2 127 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 PRAMEF27A3QJZ7 478 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 B2RBV5 119 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 SP1P08047 785 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 NUDT7P0C024 238 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 NR2F1P10589 423 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 CYP4B1P13584 511 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 PSME3P61289 254 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 FUT5Q11128 374 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 LY6DQ14210 128 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 SYPL1Q16563 259 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 GPAT3Q53EU6 434 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 GCNT6Q5T4J0 391 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 AP1ARQ63HQ0 302 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 DESI1Q6ICB0 168 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 SLC25A25Q6KCM7 469 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 C6orf89Q6UWU4 347 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 SERPINA11Q86U17 422 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 SLC15A3Q8IY34 581 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 OR10A6Q8NH74 314 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms