RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 ZNF836Q6ZNA1 936 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 ZNF438Q7Z4V0 828 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 TMEFF1Q8IYR6 380 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 OR5T3Q8NGG3 340 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 OR6Q1Q8NGQ2 317 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 STACQ99469 402 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 PRR14Q9BWN1 585 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 PHF7Q9BWX1 381 aaPredicted RBP12.86□□□□□ -0.35
RTN3-210ENST00000540798 TAS2R16Q9NYV7 291 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 CACNA1IQ9P0X4 2223 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 IGHV1OR15-9A0A0B4J2B8 117 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 AGAP5A6NIR3 686 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 KLF4O43474 513 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 FRS3O43559 492 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 AIREO43918 545 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 IDUAP35475 653 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 TGFBR1P36897 503 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 PCYT1AP49585 367 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 RHAGQ02094 409 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 OCA2Q04671 838 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 ST3GAL3Q11203 375 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 TSPAN31Q12999 210 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 ZNF846Q147U1 533 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 ARMCX4Q5H9R4 360 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 PRICKLE2Q7Z3G6 844 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 ANKRD9Q96BM1 317 aaPredicted RBP12.85□□□□□ -0.35
RTN3-210ENST00000540798 KLHDC7BQ96G42 594 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 NDEL1Q9GZM8 345 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 FAM60AQ9NP50 221 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 DUSP22Q9NRW4 184 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 MAT2BQ9NZL9 334 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 SPACA6W5XKT8 324 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 PRKYO43930 277 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 CNOT3O75175 753 aaKnown RBP12.85□□□□□ -0.35
RTN3-210ENST00000540798 OR5F1O95221 314 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 NADKO95544 446 aaPredicted RBP12.85□□□□□ -0.35
RTN3-210ENST00000540798 EIF2S1P05198 315 aaKnown RBP12.85□□□□□ -0.35
RTN3-210ENST00000540798 DBTP11182 482 aaKnown RBP12.85□□□□□ -0.35
RTN3-210ENST00000540798 CTSEP14091 401 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 TNNI3P19429 210 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 SERPINB10P48595 397 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 RAB38P57729 211 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 GAS6Q14393 721 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 ACSM5Q6NUN0 579 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 RASSF6Q6ZTQ3 369 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 ATCAYQ86WG3 371 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 MFSD4AQ8N468 514 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 OR5M11Q96RB7 305 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 KLHL28Q9NXS3 571 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 DNAJC27Q9NZQ0 273 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 MKLN1Q9UL63 735 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 RPL36Q9Y3U8 105 aaKnown RBP12.85□□□□□ -0.35
RTN3-210ENST00000540798 WDR45Q9Y484 360 aa12.85□□□□□ -0.35
RTN3-210ENST00000540798 CLDN25C9JDP6 229 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 LDB3O75112 727 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 RPLP0P05388 317 aaKnown RBP12.84□□□□□ -0.35
RTN3-210ENST00000540798 ST6GAL1P15907 406 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 CSTF2P33240 577 aaKnown RBP eCLIP12.84□□□□□ -0.35
RTN3-210ENST00000540798 IFNGR2P38484 337 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 ZNF136P52737 540 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 RAB15P59190 212 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 SHC2P98077 582 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 ZNF91Q05481 1191 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 COL9A2Q14055 689 aaPredicted RBP12.84□□□□□ -0.35
RTN3-210ENST00000540798 GINS1Q14691 196 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 SIX5Q8N196 739 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 IQCF1Q8N6M8 205 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 TCEANCQ8N8B7 351 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 TOR1AIP2Q8NFQ8 470 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 SLC9A6Q92581 669 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 ZHX1-C8orf76Q96EF9 292 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 PLA2G12AQ9BZM1 189 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 POLR2J2Q9GZM3 115 aaKnown RBP12.84□□□□□ -0.35
RTN3-210ENST00000540798 NXF2Q9GZY0 626 aaKnown RBP12.84□□□□□ -0.35
RTN3-210ENST00000540798 UCK1Q9HA47 277 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 CTPS2Q9NRF8 586 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 MRPS18AQ9NVS2 196 aaKnown RBP12.84□□□□□ -0.35
RTN3-210ENST00000540798 SLC13A4Q9UKG4 626 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 CPSF4LA6NMK7 179 aaKnown RBP12.84□□□□□ -0.35
RTN3-210ENST00000540798 ZNF12P17014 697 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 VSX2P58304 361 aaPredicted RBP12.84□□□□□ -0.35
RTN3-210ENST00000540798 FZD5Q13467 585 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 C1orf61Q13536 156 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 PRTGQ2VWP7 1150 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 PRPF38BQ5VTL8 546 aaKnown RBP12.84□□□□□ -0.35
RTN3-210ENST00000540798 IGFN1Q86VF2 1251 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 ZNF761Q86XN6 746 aaPredicted RBP12.84□□□□□ -0.35
RTN3-210ENST00000540798 PEX5LQ8IYB4 626 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 CDRT4Q8N9R6 151 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 S100ZQ8WXG8 99 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 ACOT11Q8WXI4 607 aaPredicted RBP12.84□□□□□ -0.35
RTN3-210ENST00000540798 PMM1Q92871 262 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 TMEM80Q96HE8 168 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 WDR12Q9GZL7 423 aaKnown RBP12.84□□□□□ -0.35
RTN3-210ENST00000540798 RACGAP1Q9H0H5 632 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 DCSTAMPQ9H295 470 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 ZBTB20Q9HC78 741 aaPredicted RBP12.84□□□□□ -0.35
RTN3-210ENST00000540798 TESQ9UGI8 421 aaKnown RBP12.84□□□□□ -0.35
RTN3-210ENST00000540798 SCN2AQ99250 2005 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 CENPVL1A0A0U1RR11 272 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 104.5 ms